SMTL ID : 2p69.1

Crystal Structure of Human Pyridoxal Phosphate Phosphatase with PLP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.27, D.29, D.240 Ligands: PLP.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.27, A:D.29, A:D.240, H2O.2, H2O.2 CA.3: 4 residues within 4Å: Chain B: D.27, D.29, D.240 Ligands: PLP.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.27, B:D.29, B:D.240, H2O.4, H2O.4

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.2: 12 residues within 4Å: Chain A: D.27, C.28, D.29, S.60, N.61, N.62, R.64, Y.152, D.181, H.184, K.215 Ligands: CA.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:R.64, A:Y.152 Hydrogen bonds: A:C.28, A:D.29, A:S.60, A:N.61, A:N.62, A:N.62 Water bridges: A:N.61, A:N.61, A:S.63, A:H.184, A:T.195, A:K.215 Salt bridges: A:K.215 pi-Stacking: A:H.184 PLP.4: 12 residues within 4Å: Chain B: D.27, C.28, D.29, S.60, N.61, N.62, R.64, Y.152, D.181, H.184, K.215 Ligands: CA.3 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:R.64, B:Y.152 Hydrogen bonds: B:C.28, B:D.29, B:S.60, B:N.61, B:N.62, B:N.62 Water bridges: B:D.29, B:N.61, B:N.61, B:S.63, B:K.215 Salt bridges: B:K.215 pi-Stacking: B:H.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Almo, S.C. et al., Structural genomics of protein phosphatases. J.Struct.Funct.Genom. (2007)

Release Date

2007-04-03

Peptides

Pyridoxal phosphate phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pyridoxal phosphate phosphatase

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