SMTL ID : 2p6c.1 (2 other biounits)

Crystal structure of hypothetical protein aq_2013 from Aquifex aeolicus VF5.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

9 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: H.45, L.46, T.47, R.126 Chain B: W.114 Ligands: PO4.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.46, A:T.47 Water bridges: A:H.45, A:R.126 Salt bridges: A:H.45, A:R.126, A:K.128 PO4.2: 4 residues within 4Å: Chain A: K.13, K.14, R.15, Q.125 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.13, A:R.15, A:Q.125 Water bridges: A:R.16, A:R.16 Salt bridges: A:R.15 PO4.3: 8 residues within 4Å: Chain A: T.47, H.79, E.84, N.86, H.90, R.126 Chain B: W.114 Ligands: PO4.1 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.86, A:D.123, A:R.126 Salt bridges: A:H.79, A:H.90 Water bridges: B:D.54 PO4.4: 6 residues within 4Å: Chain B: H.45, L.46, T.47, R.126 Chain C: W.114 Ligands: PO4.6 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.46, B:T.47 Water bridges: B:H.45, B:R.126 Salt bridges: B:H.45, B:R.126, B:K.128 PO4.5: 4 residues within 4Å: Chain B: K.13, K.14, R.15, Q.125 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.13, B:R.15, B:Q.125 Water bridges: B:R.16, B:R.16 Salt bridges: B:R.15 PO4.6: 8 residues within 4Å: Chain B: T.47, H.79, E.84, N.86, H.90, R.126 Chain C: W.114 Ligands: PO4.4 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain B Water bridges: C:D.54 Hydrogen bonds: B:N.86, B:D.123, B:R.126 Salt bridges: B:H.79, B:H.90 PO4.7: 6 residues within 4Å: Chain A: W.114 Chain C: H.45, L.46, T.47, R.126 Ligands: PO4.9 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:L.46, C:T.47 Water bridges: C:H.45, C:R.126 Salt bridges: C:H.45, C:R.126, C:K.128 PO4.8: 4 residues within 4Å: Chain C: K.13, K.14, R.15, Q.125 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:K.13, C:R.15, C:Q.125 Water bridges: C:R.16, C:R.16 Salt bridges: C:R.15 PO4.9: 8 residues within 4Å: Chain A: W.114 Chain C: T.47, H.79, E.84, N.86, H.90, R.126 Ligands: PO4.7 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain C Water bridges: A:D.54 Hydrogen bonds: C:N.86, C:D.123, C:R.126 Salt bridges: C:H.79, C:H.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamamoto, H. et al., Crystal structure of hypothetical protein aq_2013 from Aquifex aeolicus VF5. To be Published

Release Date

2007-09-18

Peptides

aq_2013 protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

aq_2013 protein

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