SMTL ID : 2p6p.1

X-ray crystal structure of C-C bond-forming dTDP-D-Olivose-transferase UrdGT2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-dimer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: T.84, W.87, M.116, D.137, S.225, Y.226, V.310, L.311 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.137, A:S.225 Water bridges: A:W.87 GOL.2: 5 residues within 4Å: Chain A: Y.321, G.322, T.349, Y.350, R.353 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.322, A:T.349, A:Y.350 GOL.3: 9 residues within 4Å: Chain A: A.12, T.13, F.88, W.136, D.137, S.225, G.289, V.290 Ligands: GOL.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.12, A:S.225, A:S.225, A:G.289 Water bridges: A:S.10 GOL.4: 8 residues within 4Å: Chain A: R.25, H.29, Q.30, V.31, P.49 Chain B: Q.197, D.274, V.275 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.30, A:V.31, B:Q.197 Water bridges: A:R.25, A:H.29 GOL.5: 6 residues within 4Å: Chain A: A.27, G.28, H.29, E.375 Chain B: R.190, L.366 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:M.1, B:R.190, B:R.190 Water bridges: A:M.1 GOL.6: 3 residues within 4Å: Chain B: R.207, D.208, T.209 No protein-ligand interaction detected (PLIP) GOL.7: 10 residues within 4Å: Chain B: H.285, H.286, A.287, G.288, V.290, T.292, L.304, I.305, P.306, L.311 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.286 Water bridges: B:G.288, B:V.290, B:L.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mittler, M. et al., Structure and action of the C-C bond-forming glycosyltransferase UrdGT2 involved in the biosynthesis of the antibiotic urdamycin. J.Mol.Biol. (2007)

Release Date

2007-08-07

Peptides

Glycosyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyl transferase