SMTL ID : 2p7j.1

Crystal structure of the domain of putative sensory box/GGDEF family protein from Vibrio parahaemolyticus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: Q.81, R.83, K.113, R.116, Y.118, E.138, R.139, R.153, N.171 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.118, A:Y.118, A:R.139, A:N.171, A:N.171 Water bridges: A:K.113, A:K.113 Salt bridges: A:R.83, A:K.113, A:R.116, A:R.153 SO4.3: 9 residues within 4Å: Chain B: Q.81, R.83, K.113, R.116, Y.118, E.138, R.139, R.153, N.171 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Y.118, B:R.139, B:R.139, B:N.171, B:N.171 Water bridges: B:K.113 Salt bridges: B:R.83, B:K.113, B:R.116, B:R.153

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain B: K.113, R.116, R.139, K.141, G.142 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.113, B:K.113, B:R.116, B:G.142 Water bridges: B:K.141

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 9 residues within 4Å: Chain B: Q.81, R.83, E.91, R.94, I.109, R.111, K.113, R.139, D.140 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.91, B:D.140 Water bridges: B:K.113 Salt bridges: B:R.94, B:R.111, B:K.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., The crystal structure of the domain of putative sensory box/GGDEF family protein from Vibrio parahaemolyticus. To be Published

Release Date

2007-05-01

Peptides

Putative sensory box/GGDEF family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative sensory box/GGDEF family protein