SMTL ID : 2p82.2 (1 other biounit)

Cysteine protease ATG4A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: L.28, Q.84, C.88, R.93, P.247, Q.248, S.249, L.250 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.28, A:Q.84 EDO.2: 6 residues within 4Å: Chain A: W.141, P.144, G.255, P.257, D.311, S.313 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.313, A:S.313, A:S.313 EDO.3: 7 residues within 4Å: Chain A: N.171, L.225, R.226, L.227, Y.236, R.343, M.344 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.226 EDO.4: 6 residues within 4Å: Chain A: K.152, L.156, A.164, V.165, M.181 Chain B: G.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.152, A:V.165 EDO.6: 6 residues within 4Å: Chain B: L.225, R.226, L.227, Y.236, R.343, M.344 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.226, B:G.228 EDO.7: 8 residues within 4Å: Chain B: L.28, Q.84, C.88, R.93, P.247, Q.248, S.249, L.250 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.84, B:P.247 EDO.8: 6 residues within 4Å: Chain B: P.247, Q.248, F.319, C.320, K.321, D.325 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.247, B:K.321 Water bridges: B:Q.248 EDO.9: 7 residues within 4Å: Chain B: W.141, G.143, P.144, G.255, P.257, D.311, S.313 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.311 Water bridges: B:S.313, B:S.313, B:S.313

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain B: R.55, K.56 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, J.R. et al., Human cysteine protease ATG4A. To be Published

Release Date

2007-04-10

Peptides

Cysteine protease ATG4A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Cysteine protease ATG4A

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