SMTL ID : 2p88.1

Crystal structure of N-succinyl Arg/Lys racemase from Bacillus cereus ATCC 14579

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-octamer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: K.161, K.163, D.191, N.193, E.218, D.243 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.191, A:E.218, A:D.243, H2O.2, H2O.2 MG.2: 7 residues within 4Å: Chain B: K.161, K.163, D.191, E.218, D.243, N.265, K.267 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.191, B:E.218, B:D.243, H2O.3 MG.3: 7 residues within 4Å: Chain C: K.161, K.163, D.191, E.218, D.243, N.265, K.267 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.191, C:E.218, C:D.243, H2O.5 MG.4: 7 residues within 4Å: Chain D: K.161, K.163, D.191, N.193, E.218, D.243, K.267 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.191, D:E.218, D:D.243, H2O.6 MG.5: 6 residues within 4Å: Chain E: K.161, K.163, D.191, N.193, E.218, D.243 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.191, E:E.218, E:D.243, H2O.8 MG.6: 7 residues within 4Å: Chain F: K.161, K.163, D.191, N.193, E.218, D.243, K.267 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.191, F:E.218, F:D.243, H2O.10 MG.7: 6 residues within 4Å: Chain G: K.163, D.191, N.193, E.218, D.243, E.244 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.191, G:E.218, G:D.243, H2O.12, H2O.12 MG.8: 7 residues within 4Å: Chain H: K.161, K.163, D.191, N.193, E.218, D.243, E.244 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.191, H:E.218, H:D.243, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, L. et al., Prediction and assignment of function for a divergent N-succinyl amino acid racemase. Nat.Chem.Biol. (2007)

Release Date

2007-07-03

Peptides

Mandelate racemase/muconate lactonizing enzyme family protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Mandelate racemase/muconate lactonizing enzyme family protein

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