SMTL ID : 2p8h.1

Crystal structure of human beta secretase complexed with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MY9: N-{(1S,2S)-1-BENZYL-2-HYDROXY-2-[(4S)-1,2,2-TRIMETHYL-5-OXOIMIDAZOLIDIN-4-YL]ETHYL}-N'-[(1R)-1-(4-FLUOROPHENYL)ETHYL]-5-[METHYL(METHYLSULFONYL)AMINO]ISOPHTHALAMIDE(Non-covalent)

MY9.1: 27 residues within 4Å: Chain A: G.31, Q.32, G.33, Y.34, L.50, D.52, G.54, S.55, Y.91, T.92, Q.93, F.128, W.135, I.138, Y.218, I.246, D.248, S.249, G.250, T.251, T.252, N.253, R.255, R.327, S.345, A.355, E.359 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:L.50, A:Y.91, A:Y.91, A:Q.93, A:F.128, A:F.128, A:W.135, A:Y.218, A:I.246, A:A.355 Hydrogen bonds: A:D.52, A:G.54, A:T.92, A:T.92, A:Q.93, A:Q.93, A:G.250, A:G.250, A:T.252, A:T.252, A:N.253, A:S.345 Water bridges: A:T.251, A:R.255 pi-Stacking: A:Y.91 Halogen bonds: A:E.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barrow, J.C. et al., Design and Synthesis of 2,3,5-Substituted Imidazolidin-4-one Inhibitors of BACE-1. Chemmedchem (2007)

Release Date

2007-08-14

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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