SMTL ID : 2p9i.1

Crystal Structure of bovine Arp2/3 Complex co-crystallized with ADP and crosslinked with gluteraldehyde

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.1: 1 residues within 4Å: Ligands: ADP.2 No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain B: D.158 Ligands: ADP.4 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 18 residues within 4Å: Chain A: G.13, T.14, G.15, Y.16, K.18, G.171, D.172, G.197, K.225, K.228, E.229, G.323, G.324, S.325, M.327, F.328, R.374 Ligands: CA.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.14, A:T.14, A:G.15, A:Y.16, A:Y.16, A:D.172, A:D.172, A:K.225, A:K.225, A:K.228, A:G.324 Water bridges: A:K.18, A:K.18 Salt bridges: A:K.18, A:K.18, A:R.374 pi-Stacking: A:F.328 ADP.4: 19 residues within 4Å: Chain B: G.14, T.15, G.16, F.17, K.19, G.160, D.161, G.186, R.187, R.214, K.217, E.218, G.305, G.306, S.307, M.309, Y.310, K.351 Ligands: CA.3 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:T.15, B:T.15, B:T.15, B:G.16, B:F.17, B:F.17, B:D.161, B:D.161, B:D.161, B:K.217, B:E.218, B:G.306 Water bridges: B:D.161, B:T.190 Salt bridges: B:K.19, B:K.19 pi-Stacking: B:Y.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nolen, B.J. et al., Insights into the Influence of Nucleotides on Actin Family Proteins from Seven Structures of Arp2/3 Complex. Mol.Cell (2007)

Release Date

2007-05-29

Peptides

Actin-like protein 3: A
Actin-like protein 2: B
Actin-related protein 2/3 complex subunit 1B: C
Actin-related protein 2/3 complex subunit 2: D
Actin-related protein 2/3 complex subunit 3: E
Actin-related protein 2/3 complex subunit 4: F
Actin-related protein 2/3 complex subunit 5: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Actin-like protein 3

Actin-like protein 2

Actin-related protein 2/3 complex subunit 1B

Actin-related protein 2/3 complex subunit 2

Actin-related protein 2/3 complex subunit 3

Actin-related protein 2/3 complex subunit 4

Actin-related protein 2/3 complex subunit 5

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