SMTL ID : 2pa4.2 (2 other biounits)

Crystal structure of UDP-glucose pyrophosphorylase from Corynebacteria glutamicum in complex with magnesium and UDP-glucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Ligands: UPG.3 No protein-ligand interaction detected (PLIP) MG.2: 3 residues within 4Å: Chain A: K.35, D.142 Ligands: UPG.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.142, H2O.1, H2O.1, H2O.3 MG.4: 1 residues within 4Å: Ligands: UPG.6 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain B: K.35, D.142 Ligands: UPG.6 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.142, H2O.6, H2O.9, H2O.9

2 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.3: 28 residues within 4Å: Chain A: P.18, A.19, A.20, G.21, K.35, E.36, Q.112, P.115, L.116, G.117, L.118, A.121, L.140, P.141, D.142, D.143, Y.179, G.180, E.201, K.202, A.214, T.215, G.216, Q.240, T.242, R.264 Ligands: MG.1, MG.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:A.20, A:G.21, A:E.36, A:Q.112, A:Q.112, A:G.117, A:D.143, A:G.180, A:E.201, A:A.214, A:T.242, A:R.264 Water bridges: A:K.35, A:K.35, A:K.35, A:K.69, A:E.201, A:K.202, A:K.202, A:K.202 Salt bridges: A:K.35, A:K.202, A:K.202 UPG.6: 29 residues within 4Å: Chain B: P.18, A.19, A.20, G.21, K.35, E.36, Q.112, P.115, L.116, G.117, L.118, A.121, L.140, P.141, D.142, D.143, K.178, Y.179, G.180, E.201, K.202, A.214, T.215, G.216, Y.218, T.242, R.264 Ligands: MG.4, MG.5 26 PLIP interactions: 26 interactions with chain B Hydrogen bonds: B:A.20, B:G.21, B:E.36, B:E.36, B:Q.112, B:Q.112, B:G.117, B:D.143, B:D.143, B:G.180, B:E.201, B:A.214, B:T.242, B:R.264 Water bridges: B:K.35, B:K.35, B:K.35, B:K.35, B:E.201, B:K.202, B:K.202, B:K.202 Salt bridges: B:K.35, B:K.202, B:K.202, B:K.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoden, J.B. et al., Active site geometry of glucose-1-phosphate uridylyltransferase. Protein Sci. (2007)

Release Date

2007-04-10

Peptides

UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE

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