- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 8 residues within 4Å:- Chain A: I.13, D.15, R.17, G.18, S.19, L.20
- Chain B: R.48
- Ligands: TYD.9
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.17, B:R.48, B:R.48
- Water bridges: A:D.15
EDO.4: 6 residues within 4Å:- Chain A: K.11, I.13, L.20, V.21, A.22
- Ligands: TYD.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.11, A:A.22
- Water bridges: A:N.28
EDO.5: 7 residues within 4Å:- Chain A: E.25, S.32, I.33, K.34
- Chain B: E.25, I.33, K.34
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:E.25, B:E.25
- Water bridges: B:S.32, B:I.33
EDO.6: 7 residues within 4Å:- Chain A: G.44, E.45, E.46, P.47, H.100, D.101, F.102
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.45, A:D.101, A:F.102
- Water bridges: A:G.44, A:R.68, A:F.102
EDO.7: 3 residues within 4Å:- Chain A: G.44, E.45, E.46
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.45
- Water bridges: A:G.44
EDO.8: 7 residues within 4Å:- Chain A: Y.37, R.48, H.51, M.99
- Chain B: L.20
- Ligands: TYD.2, EDO.10
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.48, A:H.51, B:R.17
- Water bridges: A:Y.37, A:Y.37, A:G.49, A:G.49
EDO.10: 9 residues within 4Å:- Chain A: R.48
- Chain B: I.13, D.15, R.17, G.18, S.19, L.20
- Ligands: TYD.2, EDO.8
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.48, A:R.48, B:R.17, B:G.18
EDO.11: 6 residues within 4Å:- Chain B: K.11, I.13, L.20, V.21, A.22
- Ligands: TYD.2
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.11, B:A.22
- Water bridges: B:K.11, B:K.11, B:N.28
EDO.12: 6 residues within 4Å:- Chain B: E.45, E.46, P.47, H.100, D.101, F.102
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.101, B:D.101, B:D.101, B:F.102
- Water bridges: B:R.68, B:F.102
EDO.13: 4 residues within 4Å:- Chain B: K.27, N.28, I.29, P.30
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Davis, M.L. et al., The X-ray Structure of dTDP-4-Keto-6-deoxy-D-glucose-3,4-ketoisomerase. J.Biol.Chem. (2007)
- Release Date
- 2007-04-24
- Peptides
- DTDP-6-deoxy-3,4-keto-hexulose isomerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Davis, M.L. et al., The X-ray Structure of dTDP-4-Keto-6-deoxy-D-glucose-3,4-ketoisomerase. J.Biol.Chem. (2007)
- Release Date
- 2007-04-24
- Peptides
- DTDP-6-deoxy-3,4-keto-hexulose isomerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B