SMTL ID : 2pae.1

Structure of a H49N mutant dTDP-4-keto-6-deoxy-D-glucose-3,4-ketoisomerase from Aneurinibacillus thermoaerophilus in complex with TDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)

TYD.1: 7 residues within 4Å: Chain A: R.35, Y.116, Y.121, R.123 Chain B: I.13, R.17, A.22 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.116 Hydrogen bonds: A:R.35 Salt bridges: A:R.123, A:R.123, B:R.17, B:R.17 pi-Stacking: A:Y.116 Water bridges: B:R.17, B:R.17 TYD.2: 8 residues within 4Å: Chain A: I.13, R.17, L.20, A.22 Chain B: R.35, Y.37, Y.116, R.123 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:L.20, B:Y.37 Water bridges: A:R.17 Salt bridges: A:R.17, A:R.17, B:R.123 Hydrogen bonds: B:R.35 pi-Stacking: B:Y.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davis, M.L. et al., The X-ray Structure of dTDP-4-Keto-6-deoxy-D-glucose-3,4-ketoisomerase. J.Biol.Chem. (2007)

Release Date

2007-04-24

Peptides

DTDP-6-deoxy-3,4-keto-hexulose isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DTDP-6-deoxy-3,4-keto-hexulose isomerase