SMTL ID : 2pcl.2 (1 other biounit)

Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-hexamer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: E.166, P.167, T.168, T.197, L.202 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.197, H2O.9 MG.13: 5 residues within 4Å: Chain B: E.166, P.167, T.168, T.197, L.202 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.197, H2O.22 MG.25: 5 residues within 4Å: Chain C: E.166, P.167, T.168, T.197, L.202 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:T.197, H2O.35 MG.37: 5 residues within 4Å: Chain D: E.166, P.167, T.168, T.197, L.202 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:T.197, H2O.48 MG.49: 5 residues within 4Å: Chain E: E.166, P.167, T.168, T.197, L.202 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:T.197, H2O.60 MG.61: 5 residues within 4Å: Chain F: E.166, P.167, T.168, T.197, L.202 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:T.197, H2O.73

36 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: A.38, S.39, G.40, S.41, G.42, K.43, S.44 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: S.142, E.145, N.175 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: S.142, G.143 Chain D: Q.89, F.90 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: R.6, S.26 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain A: F.90, H.91, Y.92 Chain D: F.90, H.91, Y.92 Ligands: SO4.42 Ligand excluded by PLIP SO4.7: 9 residues within 4Å: Chain A: R.200, E.204, I.221, R.223 Chain E: R.200, E.204, I.221, R.223 Ligands: SO4.55 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain B: A.38, S.39, G.40, S.41, G.42, K.43, S.44 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: S.142, E.145, N.175 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: S.142, G.143 Chain F: Q.89, F.90 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain B: R.6, S.26 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain B: F.90, H.91, Y.92 Chain F: F.90, H.91, Y.92 Ligands: SO4.66 Ligand excluded by PLIP SO4.19: 9 residues within 4Å: Chain B: R.200, E.204, I.221, R.223 Chain D: R.200, E.204, I.221, R.223 Ligands: SO4.43 Ligand excluded by PLIP SO4.26: 7 residues within 4Å: Chain C: A.38, S.39, G.40, S.41, G.42, K.43, S.44 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain C: S.142, E.145, N.175 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain C: S.142, G.143 Chain E: Q.89, F.90 Ligand excluded by PLIP SO4.29: 2 residues within 4Å: Chain C: R.6, S.26 Ligand excluded by PLIP SO4.30: 7 residues within 4Å: Chain C: F.90, H.91, Y.92 Chain E: F.90, H.91, Y.92 Ligands: SO4.54 Ligand excluded by PLIP SO4.31: 9 residues within 4Å: Chain C: R.200, E.204, I.221, R.223 Chain F: R.200, E.204, I.221, R.223 Ligands: SO4.67 Ligand excluded by PLIP SO4.38: 7 residues within 4Å: Chain D: A.38, S.39, G.40, S.41, G.42, K.43, S.44 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain D: S.142, E.145, N.175 Ligand excluded by PLIP SO4.40: 4 residues within 4Å: Chain A: Q.89, F.90 Chain D: S.142, G.143 Ligand excluded by PLIP SO4.41: 2 residues within 4Å: Chain D: R.6, S.26 Ligand excluded by PLIP SO4.42: 7 residues within 4Å: Chain A: F.90, H.91, Y.92 Chain D: F.90, H.91, Y.92 Ligands: SO4.6 Ligand excluded by PLIP SO4.43: 9 residues within 4Å: Chain B: R.200, E.204, I.221, R.223 Chain D: R.200, E.204, I.221, R.223 Ligands: SO4.19 Ligand excluded by PLIP SO4.50: 7 residues within 4Å: Chain E: A.38, S.39, G.40, S.41, G.42, K.43, S.44 Ligand excluded by PLIP SO4.51: 3 residues within 4Å: Chain E: S.142, E.145, N.175 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain C: Q.89, F.90 Chain E: S.142, G.143 Ligand excluded by PLIP SO4.53: 2 residues within 4Å: Chain E: R.6, S.26 Ligand excluded by PLIP SO4.54: 7 residues within 4Å: Chain C: F.90, H.91, Y.92 Chain E: F.90, H.91, Y.92 Ligands: SO4.30 Ligand excluded by PLIP SO4.55: 9 residues within 4Å: Chain A: R.200, E.204, I.221, R.223 Chain E: R.200, E.204, I.221, R.223 Ligands: SO4.7 Ligand excluded by PLIP SO4.62: 7 residues within 4Å: Chain F: A.38, S.39, G.40, S.41, G.42, K.43, S.44 Ligand excluded by PLIP SO4.63: 3 residues within 4Å: Chain F: S.142, E.145, N.175 Ligand excluded by PLIP SO4.64: 4 residues within 4Å: Chain B: Q.89, F.90 Chain F: S.142, G.143 Ligand excluded by PLIP SO4.65: 2 residues within 4Å: Chain F: R.6, S.26 Ligand excluded by PLIP SO4.66: 7 residues within 4Å: Chain B: F.90, H.91, Y.92 Chain F: F.90, H.91, Y.92 Ligands: SO4.18 Ligand excluded by PLIP SO4.67: 9 residues within 4Å: Chain C: R.200, E.204, I.221, R.223 Chain F: R.200, E.204, I.221, R.223 Ligands: SO4.31 Ligand excluded by PLIP

30 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 4 residues within 4Å: Chain A: E.73, K.74, S.77, K.109 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: E.67, V.68, D.69, E.75, L.76, L.79 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: L.53, F.86, F.88 Chain D: P.95, E.96 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain A: E.127, L.128, G.129, R.178, I.182 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: K.12, D.54, A.55 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain B: E.73, K.74, S.77, K.109 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain B: E.67, V.68, D.69, E.75, L.76, L.79 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain B: L.53, F.86, F.88 Chain F: P.95, E.96 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain B: E.127, L.128, G.129, R.178, I.182 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain B: K.12, D.54, A.55 Ligand excluded by PLIP EDO.32: 4 residues within 4Å: Chain C: E.73, K.74, S.77, K.109 Ligand excluded by PLIP EDO.33: 6 residues within 4Å: Chain C: E.67, V.68, D.69, E.75, L.76, L.79 Ligand excluded by PLIP EDO.34: 5 residues within 4Å: Chain C: L.53, F.86, F.88 Chain E: P.95, E.96 Ligand excluded by PLIP EDO.35: 5 residues within 4Å: Chain C: E.127, L.128, G.129, R.178, I.182 Ligand excluded by PLIP EDO.36: 3 residues within 4Å: Chain C: K.12, D.54, A.55 Ligand excluded by PLIP EDO.44: 4 residues within 4Å: Chain D: E.73, K.74, S.77, K.109 Ligand excluded by PLIP EDO.45: 6 residues within 4Å: Chain D: E.67, V.68, D.69, E.75, L.76, L.79 Ligand excluded by PLIP EDO.46: 5 residues within 4Å: Chain A: P.95, E.96 Chain D: L.53, F.86, F.88 Ligand excluded by PLIP EDO.47: 5 residues within 4Å: Chain D: E.127, L.128, G.129, R.178, I.182 Ligand excluded by PLIP EDO.48: 3 residues within 4Å: Chain D: K.12, D.54, A.55 Ligand excluded by PLIP EDO.56: 4 residues within 4Å: Chain E: E.73, K.74, S.77, K.109 Ligand excluded by PLIP EDO.57: 6 residues within 4Å: Chain E: E.67, V.68, D.69, E.75, L.76, L.79 Ligand excluded by PLIP EDO.58: 5 residues within 4Å: Chain C: P.95, E.96 Chain E: L.53, F.86, F.88 Ligand excluded by PLIP EDO.59: 5 residues within 4Å: Chain E: E.127, L.128, G.129, R.178, I.182 Ligand excluded by PLIP EDO.60: 3 residues within 4Å: Chain E: K.12, D.54, A.55 Ligand excluded by PLIP EDO.68: 4 residues within 4Å: Chain F: E.73, K.74, S.77, K.109 Ligand excluded by PLIP EDO.69: 6 residues within 4Å: Chain F: E.67, V.68, D.69, E.75, L.76, L.79 Ligand excluded by PLIP EDO.70: 5 residues within 4Å: Chain B: P.95, E.96 Chain F: L.53, F.86, F.88 Ligand excluded by PLIP EDO.71: 5 residues within 4Å: Chain F: E.127, L.128, G.129, R.178, I.182 Ligand excluded by PLIP EDO.72: 3 residues within 4Å: Chain F: K.12, D.54, A.55 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeyakanthan, J. et al., Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5. To be Published

Release Date

2007-10-02

Peptides

Lipoprotein-releasing system ATP-binding protein lolD: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Lipoprotein-releasing system ATP-binding protein lolD

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