SMTL ID : 2pd6.1

Structure of human hydroxysteroid dehydrogenase type 8, HSD17B8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: G.14, G.16, S.17, G.18, I.19, D.38, L.39, A.70, D.71, V.72, C.99, A.100, G.101, I.102, V.122, I.150, S.151, S.152, Y.165, K.169, P.195, G.196, I.198, T.200, P.201, M.202 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.195 Hydrogen bonds: A:G.14, A:G.16, A:S.17, A:S.17, A:I.19, A:L.39, A:D.71, A:V.72, A:A.100, A:G.101, A:K.169, A:I.198, A:I.198 Water bridges: A:G.20, A:G.20 NAD.2: 27 residues within 4Å: Chain B: G.14, G.16, S.17, G.18, I.19, D.38, L.39, A.70, D.71, V.72, C.99, A.100, G.101, I.102, V.122, I.150, S.151, S.152, Y.165, K.169, P.195, G.196, I.198, T.200, P.201, M.202, T.203 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:P.195 Hydrogen bonds: B:G.14, B:S.17, B:I.19, B:L.39, B:D.71, B:D.71, B:V.72, B:A.100, B:G.101, B:Y.165, B:K.169, B:I.198, B:I.198, B:T.200 Water bridges: B:G.20 NAD.3: 27 residues within 4Å: Chain C: G.14, G.16, S.17, G.18, I.19, D.38, L.39, A.70, D.71, V.72, C.99, A.100, G.101, I.102, V.122, I.150, S.151, S.152, Y.165, K.169, P.195, G.196, I.198, T.200, P.201, M.202, T.203 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:P.195 Hydrogen bonds: C:G.16, C:S.17, C:S.17, C:I.19, C:L.39, C:D.71, C:V.72, C:A.100, C:G.101, C:Y.165, C:K.169, C:I.198, C:I.198, C:M.202 Water bridges: C:G.20, C:G.20 NAD.4: 26 residues within 4Å: Chain D: G.14, G.16, S.17, G.18, I.19, D.38, L.39, A.70, D.71, V.72, C.99, A.100, G.101, V.122, I.150, S.151, S.152, Y.165, K.169, P.195, G.196, I.198, T.200, P.201, M.202, T.203 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:P.195 Hydrogen bonds: D:G.14, D:G.16, D:S.17, D:S.17, D:I.19, D:L.39, D:D.71, D:V.72, D:A.100, D:G.101, D:K.169, D:I.198, D:I.198, D:T.200, D:M.202 Water bridges: D:G.20, D:G.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turnbull, A.P. et al., Structure of human hydroxysteroid dehydrogenase type 8, HSD17B8. To be Published

Release Date

2007-05-08

Peptides

Estradiol 17-beta-dehydrogenase 8: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estradiol 17-beta-dehydrogenase 8