SMTL ID : 2pe4.1

Structure of Human Hyaluronidase 1, a Hyaluronan Hydrolyzing Enzyme Involved in Tumor Growth and Angiogenesis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.1: 6 residues within 4Å: Chain A: E.285, N.331, L.362, L.363, P.365, F.368 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.362 Hydrogen bonds: A:E.285

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 7 residues within 4Å: Chain A: Y.66, E.71, P.72, G.75, N.80, R.131, L.135 No protein-ligand interaction detected (PLIP)

7 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: N.20, Q.22, W.23, E.26, N.42, T.46 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.22, A:N.42 ACT.4: 5 residues within 4Å: Chain A: N.20, W.23, W.305, T.308, R.309 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.308 Water bridges: A:N.20 Salt bridges: A:R.309 ACT.5: 2 residues within 4Å: Chain A: Q.169, A.173 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.173 Hydrogen bonds: A:Q.169 ACT.6: 6 residues within 4Å: Chain A: R.161, D.211, Q.212, L.213, G.214, W.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.215 Salt bridges: A:R.161 ACT.7: 5 residues within 4Å: Chain A: D.110, E.112, Y.183, Y.228, W.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.110, A:Y.228 ACT.8: 6 residues within 4Å: Chain A: R.4, L.7, D.51, S.104, G.105, L.106 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.106 Hydrogen bonds: A:D.51, A:D.51 Water bridges: A:R.4, A:R.4 Salt bridges: A:R.4 ACT.9: 4 residues within 4Å: Chain A: P.6, G.346, H.347, Y.402 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.405 Salt bridges: A:H.347

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 5 residues within 4Å: Chain A: R.1, S.2, D.259, P.260, N.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.1, A:S.2, A:S.2, A:D.259, A:N.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chao, K.L. et al., Structure of Human Hyaluronidase-1, a Hyaluronan Hydrolyzing Enzyme Involved in Tumor Growth and Angiogenesis. Biochemistry (2007)

Release Date

2007-06-12

Peptides

Hyaluronidase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hyaluronidase-1