SMTL ID : 2pes.1 (1 other biounit)

Urate Oxidase in complex with tris-dipicolinate Lutetium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x LU: LUTETIUM (III) ION(Non-functional Binders)

LU.1: 3 residues within 4Å: Ligands: PDC.5, PDC.6, PDC.7 No protein-ligand interaction detected (PLIP) LU.2: 3 residues within 4Å: Ligands: PDC.8, PDC.9, PDC.10 No protein-ligand interaction detected (PLIP) LU.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x AZA: 8-AZAXANTHINE(Non-covalent)

AZA.4: 7 residues within 4Å: Chain A: F.159, L.170, R.176, S.226, V.227, Q.228, N.254 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.176, A:R.176, A:V.227, A:Q.228, A:Q.228, A:N.254 pi-Stacking: A:F.159, A:F.159

6 x PDC: PYRIDINE-2,6-DICARBOXYLIC ACID(Non-covalent)(Non-functional Binders)

PDC.5: 7 residues within 4Å: Chain A: P.202, K.203, A.206, Q.242 Ligands: LU.1, PDC.6, PDC.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.203, A:A.206 Hydrogen bonds: A:Q.242, A:Q.242 Salt bridges: A:K.203 PDC.6: 7 residues within 4Å: Chain A: S.199, H.200, P.202, K.203 Ligands: LU.1, PDC.5, PDC.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.199 Salt bridges: A:K.203 PDC.7: 4 residues within 4Å: Chain A: K.203 Ligands: LU.1, PDC.5, PDC.6 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.203 PDC.8: 4 residues within 4Å: Chain A: R.164 Ligands: LU.2, PDC.9, PDC.10 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.164 PDC.9: 7 residues within 4Å: Chain A: R.164, D.165, E.166, T.168 Ligands: LU.2, PDC.8, PDC.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.165 Salt bridges: A:R.164 PDC.10: 3 residues within 4Å: Ligands: LU.2, PDC.8, PDC.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pompidor, G. et al., A dipicolinate lanthanide complex for solving protein structures using anomalous diffraction. Acta Crystallogr.,Sect.D (2010)

Release Date

2008-04-22

Peptides

Uricase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uricase

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