SMTL ID : 2pfx.1

Crystal structure of uncharacterized peroxidase-related protein (YP_614459.1) from Silicibacter sp. TM1040 at 1.70 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-hexamer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: S.150, H.151 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.122, A:S.150 Salt bridges: A:H.151 ACT.3: 7 residues within 4Å: Chain A: Y.44, K.50, A.53, F.54 Chain B: M.57, D.60, L.61 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.60 Hydrophobic interactions: A:Y.44 Salt bridges: A:K.50 ACT.5: 2 residues within 4Å: Chain C: S.150, H.151 3 PLIP interactions: 3 interactions with chain C Water bridges: C:R.122, C:S.150 Salt bridges: C:H.151 ACT.7: 7 residues within 4Å: Chain C: Y.44, K.50, A.53, F.54 Chain D: M.57, D.60, L.61 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:Y.44 Salt bridges: C:K.50 Hydrogen bonds: D:D.60 ACT.9: 2 residues within 4Å: Chain E: S.150, H.151 3 PLIP interactions: 3 interactions with chain E Water bridges: E:R.122, E:S.150 Salt bridges: E:H.151 ACT.11: 7 residues within 4Å: Chain E: Y.44, K.50, A.53, F.54 Chain F: M.57, D.60, L.61 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:Y.44 Salt bridges: E:K.50 Hydrogen bonds: F:D.60

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 6 residues within 4Å: Chain A: E.22, Y.26, L.51, N.52, T.55, A.56 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.55 Water bridges: A:N.52 PG4.6: 6 residues within 4Å: Chain C: E.22, Y.26, L.51, N.52, T.55, A.56 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.55 Water bridges: C:N.52 PG4.10: 6 residues within 4Å: Chain E: E.22, Y.26, L.51, N.52, T.55, A.56 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.55 Water bridges: E:N.52

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain B: R.98, G.102, D.103, P.104, F.190 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain D: R.98, G.102, D.103, P.104, F.190 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain F: R.98, G.102, D.103, P.104, F.190 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of uncharacterized peroxidase-related protein (YP_614459.1) from Silicibacter sp. TM1040 at 1.70 A resolution. To be published

Release Date

2007-04-17

Peptides

Uncharacterized peroxidase-related protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Uncharacterized peroxidase-related protein