SMTL ID : 2pg0.1

Crystal structure of acyl-CoA dehydrogenase from Geobacillus kaustophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 27 residues within 4Å: Chain A: I.127, M.129, T.130, G.135, S.136, F.160, I.161, T.162, V.364, I.367, Y.368, A.369, T.371, E.373, M.374 Chain B: R.274, F.277, V.281, F.284, T.286, V.287, Q.342, L.343, G.345, G.346, Y.347 Chain C: Q.285 24 PLIP interactions: 17 interactions with chain A, 6 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: A:F.160, A:V.364, A:Y.368, A:Y.368 Hydrogen bonds: A:I.127, A:M.129, A:T.130, A:T.130, A:S.136, A:S.136, A:T.162, A:A.369, A:T.371, A:E.373, B:Q.342, B:G.346, C:Q.285 Water bridges: A:G.135, A:D.137, B:R.274, B:T.286 pi-Stacking: A:Y.368 Salt bridges: B:R.274, B:R.274 FAD.2: 25 residues within 4Å: Chain A: R.274, F.277, V.281, F.284, T.286, V.287, Q.342, L.343, G.345, G.346 Chain B: I.127, M.129, T.130, G.135, S.136, F.160, I.161, T.162, V.364, I.367, Y.368, T.371, E.373, M.374 Chain D: Q.285 24 PLIP interactions: 16 interactions with chain B, 7 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: B:F.160, B:Y.368, B:Y.368 Hydrogen bonds: B:I.127, B:M.129, B:T.130, B:T.130, B:S.136, B:S.136, B:T.162, B:T.162, B:A.369, B:E.373, A:Q.342, A:G.345, A:G.346, D:Q.285 Water bridges: B:G.135, B:G.135, B:T.371, A:R.274 Salt bridges: A:R.274, A:R.274 pi-Stacking: A:F.284 FAD.3: 27 residues within 4Å: Chain A: Q.285 Chain C: I.127, M.129, T.130, G.135, S.136, F.160, I.161, T.162, V.364, I.367, Y.368, A.369, T.371, E.373, M.374 Chain D: R.274, F.277, V.281, F.284, T.286, V.287, Q.342, L.343, G.345, G.346, Y.347 24 PLIP interactions: 5 interactions with chain D, 18 interactions with chain C, 1 interactions with chain A Hydrogen bonds: D:Q.342, D:G.346, C:I.127, C:M.129, C:T.130, C:T.130, C:S.136, C:S.136, C:T.162, C:T.162, C:A.369, C:T.371, C:T.371, A:Q.285 Water bridges: D:R.274, C:G.135, C:D.137 Salt bridges: D:R.274, D:R.274 Hydrophobic interactions: C:F.160, C:V.364, C:Y.368, C:Y.368 pi-Stacking: C:Y.368 FAD.4: 25 residues within 4Å: Chain B: Q.285 Chain C: R.274, F.277, V.281, F.284, T.286, V.287, Q.342, L.343, G.345, G.346 Chain D: I.127, M.129, T.130, G.135, S.136, F.160, I.161, T.162, V.364, I.367, Y.368, T.371, E.373, M.374 23 PLIP interactions: 15 interactions with chain D, 7 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: D:F.160, D:Y.368, D:Y.368 Hydrogen bonds: D:I.127, D:M.129, D:T.130, D:T.130, D:S.136, D:S.136, D:T.162, D:A.369, D:E.373, C:Q.342, C:G.345, C:G.346, B:Q.285 Water bridges: D:G.135, D:G.135, D:T.371, C:R.274 Salt bridges: C:R.274, C:R.274 pi-Stacking: C:F.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., Crystal structure of acyl-CoA dehydrogenase from G. kaustophilus. To be Published

Release Date

2007-05-08

Peptides

Acyl-CoA dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Acyl-CoA dehydrogenase