SMTL ID : 2pgd.1

THE STRUCTURE OF 6-PHOSPHOGLUCONATE DEHYDROGENASE REFINED AT 2 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Y.191, Q.259, K.260, R.287 Chain B: R.446, H.452 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.191, A:K.260 Water bridges: A:E.190, A:R.287 Salt bridges: A:R.287, B:R.446, B:H.452 SO4.2: 3 residues within 4Å: Chain A: N.102, K.183, N.187 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.102, A:V.127, A:N.187 Water bridges: A:E.190, B:H.452 Salt bridges: A:K.183 SO4.3: 3 residues within 4Å: Chain A: G.211, H.212, H.248 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.212, A:K.213 Water bridges: A:H.248 Salt bridges: A:H.212, A:H.248 SO4.4: 6 residues within 4Å: Chain A: R.446, H.452 Chain B: Y.191, Q.259, K.260, R.287 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B Salt bridges: A:R.446, A:H.452, B:R.287 Hydrogen bonds: B:Y.191, B:Y.191, B:K.260 Water bridges: B:R.287, B:R.287 SO4.5: 3 residues within 4Å: Chain B: N.102, K.183, N.187 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.102, B:V.127, B:N.187 Water bridges: B:E.190, A:H.452 Salt bridges: B:K.183 SO4.6: 3 residues within 4Å: Chain B: G.211, H.212, H.248 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.212, B:K.213 Salt bridges: B:H.212, B:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, M.J. et al., The structure of 6-phosphogluconate dehydrogenase refined at 2.5 A resolution. Acta Crystallogr.,Sect.B (1991)

Release Date

1995-02-27

Peptides

6-PHOSPHOGLUCONATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

6-PHOSPHOGLUCONATE DEHYDROGENASE

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