SMTL ID : 2ph6.1

Crystal Structure of Human Beta Secretase Complexed with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.116, A.117, N.118, E.154, S.159, Q.163 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.116, A:N.118, A:S.159, A:Q.163 Water bridges: A:N.118, A:N.118

1 x 712: 3-({[(1R)-1-(4-FLUOROPHENYL)ETHYL]AMINO}CARBONYL)-5-[METHYL(METHYLSULFONYL)AMINO]BENZYL ALPHA-METHYL-D-PHENYLALANINATE(Non-covalent)

712.2: 24 residues within 4Å: Chain A: G.31, Q.32, G.33, Y.34, L.50, D.52, G.54, Y.91, T.92, Q.93, F.128, W.135, I.138, D.248, S.249, G.250, T.251, T.252, N.253, R.255, R.327, S.345, A.355, E.359 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.50, A:Y.91, A:Y.91, A:Q.93, A:F.128, A:W.135, A:W.135, A:I.138, A:A.355 Hydrogen bonds: A:T.92, A:T.92, A:Q.93, A:D.248, A:G.250, A:T.252, A:N.253, A:N.253, A:S.345 Water bridges: A:Q.93, A:T.252 Halogen bonds: A:E.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lindsley, S.R. et al., Design, synthesis, and SAR of macrocyclic tertiary carbinamine BACE-1 inhibitors. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-06-05

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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