SMTL ID : 2pid.1

Crystal structure of human mitochondrial tyrosyl-tRNA synthetase in complex with an adenylate analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x YSA: 5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE(Non-covalent)

YSA.1: 24 residues within 4Å: Chain A: Y.50, C.51, G.52, F.53, D.54, H.61, G.63, H.64, A.67, L.84, T.89, D.94, N.146, Y.194, Q.198, D.201, Q.214, G.216, G.217, D.219, Q.220, P.245, L.246, I.247 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.50, A:Q.198 Hydrogen bonds: A:G.52, A:D.54, A:D.54, A:H.64, A:Y.194, A:Q.198, A:D.201, A:G.217, A:D.219, A:Q.220, A:I.247, A:I.247 Water bridges: A:G.52 Salt bridges: A:H.64 YSA.2: 24 residues within 4Å: Chain B: Y.50, C.51, G.52, F.53, D.54, H.61, G.63, H.64, A.67, L.84, T.89, D.94, N.146, Y.194, Q.198, D.201, Q.214, G.216, G.217, D.219, Q.220, P.245, L.246, I.247 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.50, B:Q.198 Hydrogen bonds: B:Y.50, B:G.52, B:D.54, B:D.94, B:Y.194, B:D.201, B:D.201, B:G.217, B:D.219, B:Q.220, B:I.247, B:I.247 Water bridges: B:G.52, B:D.94, B:L.215 Salt bridges: B:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonnefond, L. et al., Crystal Structure of Human Mitochondrial Tyrosyl-tRNA Synthetase Reveals Common and Idiosyncratic Features. Structure (2007)

Release Date

2007-10-23

Peptides

Tyrosyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosyl-tRNA synthetase

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