SMTL ID : 2pl3.1

Human DEAD-box RNA helicase DDX10, DEAD domain in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: E.179 Ligands: ADP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.179, H2O.1, H2O.1, H2O.1, H2O.3

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 15 residues within 4Å: Chain A: F.27, Y.45, L.47, T.49, Q.52, K.70, T.71, G.72, S.73, G.74, K.75, T.76, L.77, E.179 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:Y.45, A:L.47, A:T.49, A:Q.52, A:G.72, A:S.73, A:G.74, A:K.75, A:T.76, A:T.76, A:T.76 Water bridges: A:Y.45, A:L.47, A:T.71, A:K.75, A:L.77, A:E.179 Salt bridges: A:K.75 pi-Stacking: A:Y.45, A:Y.45

4 x EOH: ETHANOL(Non-functional Binders)

EOH.3: 3 residues within 4Å: Chain A: T.71, L.109, R.182 No protein-ligand interaction detected (PLIP) EOH.4: 1 residues within 4Å: Chain A: Q.54 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.54 EOH.5: 2 residues within 4Å: Chain A: W.231, H.233 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.233 EOH.6: 6 residues within 4Å: Chain A: L.184, A.189, M.192, N.193, L.219, L.222 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.219, A:L.222 Hydrogen bonds: A:A.189, A:N.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schutz, P. et al., Comparative Structural Analysis of Human DEAD-Box RNA Helicases. Plos One (2010)

Release Date

2007-05-01

Peptides

Probable ATP-dependent RNA helicase DDX10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ATP-dependent RNA helicase DDX10