SMTL ID : 2pla.1

Crystal structure of human glycerol-3-phosphate dehydrogenase 1-like protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

homo-dimer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: K.206, N.207, T.266, G.270, R.271, N.272 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.266, A:R.271, A:N.272, A:N.272 Water bridges: A:K.206, A:K.206, A:N.207 Salt bridges: A:K.206, A:R.271 PO4.2: 5 residues within 4Å: Chain A: K.22, G.68, H.69, K.70, A.159 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.70, A:A.159 Salt bridges: A:K.22, A:H.69 PO4.4: 6 residues within 4Å: Chain B: K.206, N.207, T.266, G.270, R.271, N.272 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.266, B:R.271, B:N.272, B:N.272 Water bridges: B:K.206, B:K.206, B:N.207 Salt bridges: B:K.206, B:R.271

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 22 residues within 4Å: Chain A: S.13, G.14, N.15, W.16, G.17, W.41, F.43, Y.65, I.95, P.96, F.99, R.102, L.120, I.121, K.122, N.153, I.154, A.155, R.271, G.296, Q.297, K.298 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:W.16 Hydrogen bonds: A:S.13, A:G.14, A:N.15, A:N.15, A:W.16, A:G.17, A:R.102, A:K.122, A:A.155, A:Q.297, A:K.298 Water bridges: A:F.43, A:K.122, A:N.156, A:N.207, A:R.271, A:K.298, A:K.298 Salt bridges: A:R.271, A:R.271 pi-Stacking: A:W.16, A:F.43, A:F.43, A:F.99, A:F.99 NAD.6: 23 residues within 4Å: Chain B: S.13, G.14, N.15, W.16, G.17, F.43, E.45, Y.65, V.94, I.95, P.96, F.99, L.120, I.121, K.122, N.153, I.154, A.155, R.271, G.296, Q.297, K.298, Q.300 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:W.16 Hydrogen bonds: B:G.14, B:G.14, B:N.15, B:N.15, B:W.16, B:G.17, B:E.45, B:E.45, B:I.95, B:K.122, B:A.155, B:R.271, B:Q.297, B:K.298, B:Q.300 Water bridges: B:N.156, B:N.207 Salt bridges: B:R.271, B:R.271 pi-Stacking: B:W.16, B:F.43, B:F.99, B:F.99

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain B: K.22, H.69, K.70 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Uppenberg, J. et al., Crystal structure of human glycerol-3-phosphate dehydrogenase 1-like protein. To be Published

Release Date

2007-05-01

Peptides

Glycerol-3-phosphate dehydrogenase 1-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycerol-3-phosphate dehydrogenase 1-like protein