SMTL ID : 2pmk.1

Crystal structures of an isolated ABC-ATPase in complex with TNP-ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 128: SPIRO(2,4,6-TRINITROBENZENE[1,2A]-2O',3O'-METHYLENE-ADENINE-TRIPHOSPHATE(Non-covalent)

128.1: 14 residues within 4Å: Chain A: Y.13, P.18, I.20, R.39, S.40, G.41, S.42, G.43, K.44, S.45, T.46, K.49, Y.55 Ligands: ADP.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.41, A:S.42, A:G.43, A:K.44, A:S.45, A:S.45, A:T.46, A:K.49, A:Y.55 Water bridges: A:K.44, A:K.44, A:S.45, A:S.45, A:S.45, A:S.45, A:E.167 Salt bridges: A:K.44, A:K.49 pi-Stacking: A:Y.13, A:Y.13

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: Y.13, I.20, R.39, S.40, G.41, S.42, G.43, K.44, S.45, T.46, K.49, Y.55 Ligands: 128.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.41, A:S.42, A:G.43, A:K.44, A:S.45, A:S.45, A:T.46, A:Y.55 Water bridges: A:K.44, A:S.45, A:S.45, A:S.45, A:S.45, A:K.49, A:E.167 Salt bridges: A:K.44 pi-Stacking: A:Y.13, A:Y.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oswald, C. et al., Water-mediated protein-fluorophore interactions modulate the affinity of an ABC-ATPase/TNP-ADP complex. J.Struct.Biol. (2008)

Release Date

2008-02-05

Peptides

Alpha-hemolysin translocation ATP-binding protein hlyB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-hemolysin translocation ATP-binding protein hlyB