SMTL ID : 2pn5.1

Crystal Structure of TEP1r

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: Y.158, N.616, V.617, S.618 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 6 residues within 4Å: Chain A: R.146, N.178, S.180, E.187, S.190, T.192 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.192 Hydrogen bonds: A:R.146, A:N.178, A:S.180, A:S.190 NAG.3: 4 residues within 4Å: Chain A: V.211, H.217, N.221, E.264 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.211 Hydrogen bonds: A:N.221, A:N.221 NAG.4: 7 residues within 4Å: Chain A: Y.289, T.290, N.291, S.1187, Y.1189, E.1190, Y.1268 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.1268 Hydrogen bonds: A:Y.289, A:N.291, A:S.1187, A:S.1187

3 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: S.900, V.901, F.902, K.945, A.946, Q.955 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.901, A:F.902, A:A.946, A:A.946 NA.6: 4 residues within 4Å: Chain A: K.1038, E.1040, N.1077, Q.1078 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.1038, A:K.1038, A:N.1077, A:Q.1078 NA.7: 6 residues within 4Å: Chain A: V.1273, A.1274, L.1275, K.1276, K.1301, Q.1302 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.1273, A:L.1275, A:K.1276, A:K.1276, A:Q.1302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baxter, R.H.G. et al., Structural basis for conserved complement factor-like function in the antimalarial protein TEP1. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-07-24

Peptides

Thioester-containing protein I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thioester-containing protein I