- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 9 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 8 residues within 4Å:- Chain A: D.180, N.181, G.183, E.184, A.185, D.204, G.205
- Chain F: E.119
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.183
- Water bridges: A:G.183
MPD.3: 5 residues within 4Å:- Chain B: F.33, N.206, L.208, E.249, Y.252
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.33, B:E.249, B:Y.252
- Hydrogen bonds: B:L.208, B:Y.252
MPD.4: 6 residues within 4Å:- Chain B: L.165, V.192, E.193, K.194, I.195, E.230
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.165, B:I.195
MPD.6: 8 residues within 4Å:- Chain B: E.119
- Chain C: D.180, N.181, G.183, E.184, A.185, D.204, G.205
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.183
- Water bridges: C:G.183
MPD.7: 5 residues within 4Å:- Chain D: F.33, N.206, L.208, E.249, Y.252
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:F.33, D:E.249, D:Y.252
- Hydrogen bonds: D:L.208, D:Y.252
MPD.8: 6 residues within 4Å:- Chain D: L.165, V.192, E.193, K.194, I.195, E.230
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:L.165, D:I.195
MPD.10: 8 residues within 4Å:- Chain D: E.119
- Chain E: D.180, N.181, G.183, E.184, A.185, D.204, G.205
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:G.183
- Water bridges: E:G.183
MPD.11: 5 residues within 4Å:- Chain F: F.33, N.206, L.208, E.249, Y.252
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:F.33, F:E.249, F:Y.252
- Hydrogen bonds: F:L.208, F:Y.252
MPD.12: 6 residues within 4Å:- Chain F: L.165, V.192, E.193, K.194, I.195, E.230
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:L.165, F:I.195
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Navarro, M.V.A.S. et al., Insights into the mechanism of progressive RNA degradation by the archaeal exosome. J.Biol.Chem. (2008)
- Release Date
- 2008-03-18
- Peptides
- Probable exosome complex exonuclease 1: ACE
Probable exosome complex exonuclease 2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 9 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Navarro, M.V.A.S. et al., Insights into the mechanism of progressive RNA degradation by the archaeal exosome. J.Biol.Chem. (2008)
- Release Date
- 2008-03-18
- Peptides
- Probable exosome complex exonuclease 1: ACE
Probable exosome complex exonuclease 2: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B