SMTL ID : 2pq7.1

Crystal structure of predicted HD superfamily hydrolase (104161995) from uncultured Thermotogales bacterium at 1.45 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 7 residues within 4Å: Chain A: H.66, D.67, H.80, H.112 Ligands: FE.2, PO4.4, PO4.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.67, A:H.80, A:H.112, H2O.1 FE.2: 6 residues within 4Å: Chain A: H.37, H.66, D.67, D.132 Ligands: FE.1, PO4.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.37, A:H.66, A:D.67, A:D.132, H2O.1 FE.7: 7 residues within 4Å: Chain B: H.66, D.67, H.80, H.112 Ligands: FE.8, PO4.10, PO4.11 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.67, B:H.80, B:H.112, H2O.7 FE.8: 6 residues within 4Å: Chain B: H.37, H.66, D.67, D.132 Ligands: FE.7, PO4.10 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.37, B:H.66, B:D.67, B:D.132, H2O.7

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain A: K.107, A.108, S.111, P.120, T.121, S.122, G.125 Ligand excluded by PLIP CL.9: 7 residues within 4Å: Chain B: K.107, A.108, S.111, P.120, T.121, S.122, G.125 Ligand excluded by PLIP

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 9 residues within 4Å: Chain A: H.33, H.37, D.67, R.70, H.80, D.132 Ligands: FE.1, FE.2, PO4.5 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:H.33, A:H.37, A:R.70, A:H.80 PO4.5: 7 residues within 4Å: Chain A: R.70, H.80, H.112, R.113, D.132 Ligands: FE.1, PO4.4 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:R.70, A:H.80, A:H.112, A:R.113 PO4.10: 9 residues within 4Å: Chain B: H.33, H.37, D.67, R.70, H.80, D.132 Ligands: FE.7, FE.8, PO4.11 4 PLIP interactions: 4 interactions with chain B Salt bridges: B:H.33, B:H.37, B:R.70, B:H.80 PO4.11: 7 residues within 4Å: Chain B: R.70, H.80, H.112, R.113, D.132 Ligands: FE.7, PO4.10 4 PLIP interactions: 4 interactions with chain B Salt bridges: B:R.70, B:H.80, B:H.112, B:R.113

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 4 residues within 4Å: Chain A: E.9, R.10, I.11, P.12 No protein-ligand interaction detected (PLIP) MPD.12: 4 residues within 4Å: Chain B: E.9, R.10, I.11, P.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of predicted HD superfamily hydrolase (104161995) from uncultured Thermotogales bacterium at 1.45 A resolution. To be published

Release Date

2007-05-15

Peptides

Predicted HD superfamily hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Predicted HD superfamily hydrolase