SMTL ID : 2pqf.9 (8 other biounits)

Human Poly(ADP-Ribose) Polymerase 12, Catalytic fragment in complex with an inhibitor 3-Aminobenzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x GAB: 3-AMINOBENZOIC ACID(Non-covalent)

GAB.1: 10 residues within 4Å: Chain A: F.77, H.78, G.79, Y.110, F.111, A.112, Y.117, S.118, Y.121, I.174 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.110, A:A.112, A:Y.117 Hydrogen bonds: A:G.79, A:F.111, A:S.118 Salt bridges: A:H.78 pi-Stacking: A:Y.121 GAB.3: 9 residues within 4Å: Chain B: H.78, G.79, Y.110, F.111, A.112, Y.117, S.118, Y.121, I.174 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.110, B:A.112, B:Y.117, B:Y.121, B:Y.121 Hydrogen bonds: B:G.79, B:F.111, B:S.118 Salt bridges: B:H.78

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 8 residues within 4Å: Chain A: H.78, T.80, F.84, I.88, F.93, D.94, V.97, C.98 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.84, A:F.84 Hydrogen bonds: A:T.80, A:T.80, A:D.94 Water bridges: A:H.78 Salt bridges: A:H.78 CIT.4: 7 residues within 4Å: Chain B: H.78, T.80, F.84, I.88, F.93, D.94, V.97 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.88, B:F.93 Hydrogen bonds: B:H.78, B:T.80, B:D.94, B:D.94 Water bridges: B:S.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karlberg, T. et al., Structural Basis for Lack of ADP-ribosyltransferase Activity in Poly(ADP-ribose) Polymerase-13/Zinc Finger Antiviral Protein. J.Biol.Chem. (2015)

Release Date

2007-05-15

Peptides

Poly [ADP-ribose] polymerase 12: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Poly [ADP-ribose] polymerase 12

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