SMTL ID : 2pqk.5 (5 other biounits)

X-ray crystal structure of human Mcl-1 in complex with Bim BH3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.135 Chain B: H.83 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.83, A:D.135, A:D.135, H2O.2, H2O.3 ZN.2: 3 residues within 4Å: Chain A: D.144, E.148 Chain D: E.20 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain A Metal complexes: D:E.20, D:E.20, A:D.144, A:D.144, A:E.148 ZN.4: 2 residues within 4Å: Chain A: H.83 Chain B: D.135 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:H.83, B:D.135, B:D.135, H2O.6, H2O.7 ZN.5: 3 residues within 4Å: Chain B: D.144, E.148 Chain C: E.20 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Metal complexes: C:E.20, C:E.20, B:D.144, B:D.144, B:E.148 ZN.7: 2 residues within 4Å: Chain B: H.151 Chain C: E.13 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: B:H.151, C:E.13, C:E.13, H2O.8, H2O.8 ZN.8: 2 residues within 4Å: Chain A: H.151 Chain D: E.13 5 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: D:E.13, D:E.13, A:H.151, H2O.9, H2O.9

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: E.71, D.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.72 NA.6: 2 residues within 4Å: Chain B: E.71, D.72 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fire, E. et al., Mcl-1-Bim complexes accommodate surprising point mutations via minor structural changes. Protein Sci. (2010)

Release Date

2007-06-19

Peptides

Induced myeloid leukemia cell differentiation protein Mcl-1: AB
Bim BH3 peptide: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

Induced myeloid leukemia cell differentiation protein Mcl-1

Bim BH3 peptide

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