SMTL ID : 2pr1.1 (1 other biounit)

Crystal structure of the Bacillus subtilis N-acetyltransferase YlbP protein in complex with Coenzyme-A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 4 residues within 4Å: Chain A: E.8, Y.54, G.56, D.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.57 GLC-FRU.2: 4 residues within 4Å: Chain B: E.8, L.11, Y.54, D.57 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.8, B:E.8

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: Y.66, Q.67, V.68, N.69 Chain B: A.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.69, A:N.69 SO4.7: 3 residues within 4Å: Chain B: K.108, N.130, W.149 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.149 Salt bridges: B:K.108

2 x COA: COENZYME A(Non-covalent)

COA.4: 16 residues within 4Å: Chain A: L.88, E.89, V.90, Y.94, Q.95, N.96, R.97, G.98, Y.99, G.100, R.101, K.121, S.122, E.124, F.125, K.128 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.88 Hydrogen bonds: A:V.90, A:Q.95, A:N.96, A:R.97, A:G.98, A:G.98, A:Y.99, A:G.100, A:R.101, A:S.122 Salt bridges: A:R.101, A:K.128 COA.8: 14 residues within 4Å: Chain B: E.89, V.90, Q.95, N.96, R.97, G.98, Y.99, G.100, R.101, R.119, S.122, E.124, F.125, K.128 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.125 Hydrogen bonds: B:V.90, B:Q.95, B:N.96, B:G.98, B:G.98, B:G.100, B:R.101, B:R.119 Salt bridges: B:R.101, B:K.128

2 x CO: COBALT (II) ION(Non-covalent)(Non-functional Binders)

CO.5: 2 residues within 4Å: Chain B: W.149, H.150 No protein-ligand interaction detected (PLIP) CO.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Crystal structure of the Bacillus subtilis N-acetyltransferase YlbP protein in complex with Coenzyme-A. To be Published

Release Date

2007-05-15

Peptides

Uncharacterized N-acetyltransferase ylbP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized N-acetyltransferase ylbP

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