SMTL ID : 2prz.2 (1 other biounit)

S. cerevisiae orotate phosphoribosyltransferase complexed with OMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: Y.76, K.77 Chain B: R.106 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.106 Chain B: Y.76, K.77 Ligand excluded by PLIP

2 x OMP: OROTIDINE-5'-MONOPHOSPHATE(Non-covalent)

OMP.2: 13 residues within 4Å: Chain A: L.29, K.30, F.38, F.39, D.133, V.134, M.135, T.136, A.137, G.138, T.139, A.140, R.164 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.29 Hydrogen bonds: A:K.30, A:F.39, A:F.39, A:V.134, A:T.136, A:T.136, A:T.136, A:A.137, A:G.138, A:T.139, A:A.140, A:R.164 Water bridges: A:K.30, A:S.31, A:D.133, A:D.133, A:D.133, A:D.133, A:D.133, A:T.139, A:I.141 Salt bridges: A:K.30 pi-Stacking: A:F.38 OMP.4: 13 residues within 4Å: Chain B: L.29, K.30, F.38, F.39, D.133, V.134, M.135, T.136, A.137, G.138, T.139, A.140, R.164 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:L.29 Hydrogen bonds: B:K.30, B:F.39, B:F.39, B:V.134, B:T.136, B:T.136, B:T.136, B:A.137, B:G.138, B:T.139, B:T.139, B:A.140, B:R.164 Water bridges: B:S.31, B:D.133, B:D.133, B:T.139, B:T.139, B:I.141 Salt bridges: B:K.30 pi-Stacking: B:F.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez-Segura, L. et al., Ternary complex formation and induced asymmetry in orotate phosphoribosyltransferase. Biochemistry (2007)

Release Date

2008-01-15

Peptides

Orotate phosphoribosyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Orotate phosphoribosyltransferase 1

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