SMTL ID : 2pu5.1

Crystal Structure of a C-C bond hydrolase, BphD, from Burkholderia xenovorans LB400

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 12 residues within 4Å: Chain A: G.41, G.42, G.43, A.46, N.51, N.111, S.112, F.175, R.190, F.239, H.265, W.266 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.175 Hydrogen bonds: A:G.42, A:G.43, A:N.51, A:N.111, A:S.112, A:W.266 Salt bridges: A:R.190, A:H.265 MLI.2: 12 residues within 4Å: Chain B: G.41, G.42, G.43, A.46, N.51, N.111, S.112, F.175, R.190, F.239, H.265, W.266 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.175 Hydrogen bonds: B:G.42, B:G.43, B:N.51, B:N.111, B:S.112, B:W.266 Salt bridges: B:R.190, B:H.265 MLI.3: 12 residues within 4Å: Chain C: G.41, G.42, G.43, A.46, N.51, N.111, S.112, F.175, R.190, F.239, H.265, W.266 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.175 Hydrogen bonds: C:G.42, C:G.43, C:N.51, C:N.111, C:S.112, C:W.266 Salt bridges: C:R.190, C:H.265 MLI.4: 12 residues within 4Å: Chain D: G.41, G.42, G.43, A.46, N.51, N.111, S.112, F.175, R.190, F.239, H.265, W.266 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:F.175 Hydrogen bonds: D:G.42, D:G.43, D:N.51, D:N.111, D:S.112, D:W.266 Salt bridges: D:R.190, D:H.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horsman, G.P. et al., The Tautomeric Half-reaction of BphD, a C-C Bond Hydrolase: KINETIC AND STRUCTURAL EVIDENCE SUPPORTING A KEY ROLE FOR HISTIDINE 265 OF THE CATALYTIC TRIAD. J.Biol.Chem. (2007)

Release Date

2007-05-22

Peptides

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase

Related Entries With Identical Sequence