SMTL ID : 2pu7.1

Crystal Structure of S112A/H265A double mutant of a C-C hydrolase, BphD, from Burkholderia xenovorans LB400

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Ligands: MLI.2 No protein-ligand interaction detected (PLIP) NA.4: 1 residues within 4Å: Ligands: MLI.5 No protein-ligand interaction detected (PLIP) NA.7: 1 residues within 4Å: Ligands: MLI.8 No protein-ligand interaction detected (PLIP) NA.10: 1 residues within 4Å: Ligands: MLI.11 No protein-ligand interaction detected (PLIP)

8 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 3 residues within 4Å: Chain A: S.180, I.182 Ligands: NA.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.180 Water bridges: A:S.180 MLI.3: 10 residues within 4Å: Chain A: G.41, G.42, G.43, N.111, A.112, F.175, R.190, F.239, A.265, W.266 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.175, A:F.239 Hydrogen bonds: A:G.42, A:G.43, A:N.111, A:W.266 Water bridges: A:G.41, A:M.113 Salt bridges: A:R.190 MLI.5: 3 residues within 4Å: Chain B: S.180, I.182 Ligands: NA.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.180 Water bridges: B:S.180 MLI.6: 10 residues within 4Å: Chain B: G.41, G.42, G.43, N.111, A.112, F.175, R.190, F.239, A.265, W.266 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.175, B:F.239 Hydrogen bonds: B:G.42, B:G.43, B:N.111, B:W.266 Water bridges: B:G.41, B:M.113 Salt bridges: B:R.190 MLI.8: 3 residues within 4Å: Chain C: S.180, I.182 Ligands: NA.7 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.180 Water bridges: C:S.180 MLI.9: 10 residues within 4Å: Chain C: G.41, G.42, G.43, N.111, A.112, F.175, R.190, F.239, A.265, W.266 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.175, C:F.239 Hydrogen bonds: C:G.42, C:G.43, C:N.111, C:W.266 Water bridges: C:G.41, C:M.113 Salt bridges: C:R.190 MLI.11: 3 residues within 4Å: Chain D: S.180, I.182 Ligands: NA.10 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.180 Water bridges: D:S.180 MLI.12: 10 residues within 4Å: Chain D: G.41, G.42, G.43, N.111, A.112, F.175, R.190, F.239, A.265, W.266 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:F.175, D:F.239 Hydrogen bonds: D:G.42, D:G.43, D:N.111, D:W.266 Water bridges: D:G.41, D:M.113 Salt bridges: D:R.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horsman, G.P. et al., The Tautomeric Half-reaction of BphD, a C-C Bond Hydrolase: KINETIC AND STRUCTURAL EVIDENCE SUPPORTING A KEY ROLE FOR HISTIDINE 265 OF THE CATALYTIC TRIAD. J.Biol.Chem. (2007)

Release Date

2007-05-22

Peptides

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase

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