SMTL ID : 2pvc.1 (2 other biounits)

DNMT3L recognizes unmethylated histone H3 lysine 4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.69 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- LYS- GLN- THR- ALA: Histone H3 peptide(Non-covalent)

ALA-ARG-THR-LYS-GLN-THR-ALA.1: 14 residues within 4Å: Chain A: D.88, D.90, Y.92, Q.93, S.94, G.102, E.103, T.104, L.105, L.106, I.107, V.134, H.135, M.137 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.106, A:I.107, A:V.134 Hydrogen bonds: A:D.90, A:G.102, A:E.103, A:L.105, A:L.105, A:I.107, A:V.134

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.96, C.99, C.118, C.121 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.96, A:C.99, A:C.118, A:C.121 ZN.3: 4 residues within 4Å: Chain A: C.108, C.113, C.142, C.145 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.108, A:C.113, A:C.142, A:C.145 ZN.4: 4 residues within 4Å: Chain A: C.53, C.56, C.73, C.76 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.53, A:C.56, A:C.73, A:C.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ooi, S.K. et al., DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature (2007)

Release Date

2007-08-14

Peptides

DNA (cytosine-5)-methyltransferase 3-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA (cytosine-5)-methyltransferase 3-like

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