SMTL ID : 2pvs.3 (2 other biounits)

Structure of human pancreatic lipase related protein 2 mutant N336Q

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-octamer

Ligands

32 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.109, H.110, R.113 Chain B: K.82, D.85 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: H.110, R.113 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: K.82, D.85 Chain B: R.109, H.110, R.113 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: E.45, N.46, P.47, N.48, N.49 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain A: F.316, K.317, G.318, K.319, T.320, S.321 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain B: H.110, R.113 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain B: E.45, N.46, P.47, N.48, N.49 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain B: F.316, K.317, G.318, K.319, T.320, S.321 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain C: R.109, H.110, R.113 Chain D: K.82, D.85 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain C: H.110, R.113 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain C: K.82, D.85 Chain D: R.109, H.110, R.113 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain C: E.45, N.46, P.47, N.48, N.49 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain C: F.316, K.317, G.318, K.319, T.320, S.321 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain D: H.110, R.113 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain D: E.45, N.46, P.47, N.48, N.49 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain D: F.316, K.317, G.318, K.319, T.320, S.321 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain E: R.109, H.110, R.113 Chain F: K.82, D.85 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain E: H.110, R.113 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain E: K.82, D.85 Chain F: R.109, H.110, R.113 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain E: E.45, N.46, P.47, N.48, N.49 Ligand excluded by PLIP SO4.25: 6 residues within 4Å: Chain E: F.316, K.317, G.318, K.319, T.320, S.321 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain F: H.110, R.113 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain F: E.45, N.46, P.47, N.48, N.49 Ligand excluded by PLIP SO4.29: 6 residues within 4Å: Chain F: F.316, K.317, G.318, K.319, T.320, S.321 Ligand excluded by PLIP SO4.31: 5 residues within 4Å: Chain G: R.109, H.110, R.113 Chain H: K.82, D.85 Ligand excluded by PLIP SO4.32: 2 residues within 4Å: Chain G: H.110, R.113 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain G: K.82, D.85 Chain H: R.109, H.110, R.113 Ligand excluded by PLIP SO4.34: 5 residues within 4Å: Chain G: E.45, N.46, P.47, N.48, N.49 Ligand excluded by PLIP SO4.35: 6 residues within 4Å: Chain G: F.316, K.317, G.318, K.319, T.320, S.321 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain H: H.110, R.113 Ligand excluded by PLIP SO4.38: 5 residues within 4Å: Chain H: E.45, N.46, P.47, N.48, N.49 Ligand excluded by PLIP SO4.39: 6 residues within 4Å: Chain H: F.316, K.317, G.318, K.319, T.320, S.321 Ligand excluded by PLIP

8 x CA: CALCIUM ION(Non-covalent)

CA.6: 4 residues within 4Å: Chain A: E.189, R.192, D.194, D.197 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.189, A:R.192, A:D.194, A:D.197, A:D.197 CA.10: 4 residues within 4Å: Chain B: E.189, R.192, D.194, D.197 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.189, B:R.192, B:D.194, B:D.197, H2O.2 CA.16: 4 residues within 4Å: Chain C: E.189, R.192, D.194, D.197 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.189, C:R.192, C:D.194, C:D.197, C:D.197 CA.20: 4 residues within 4Å: Chain D: E.189, R.192, D.194, D.197 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.189, D:R.192, D:D.194, D:D.197, H2O.5 CA.26: 4 residues within 4Å: Chain E: E.189, R.192, D.194, D.197 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.189, E:R.192, E:D.194, E:D.197, E:D.197 CA.30: 4 residues within 4Å: Chain F: E.189, R.192, D.194, D.197 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.189, F:R.192, F:D.194, F:D.197, H2O.7 CA.36: 4 residues within 4Å: Chain G: E.189, R.192, D.194, D.197 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.189, G:R.192, G:D.194, G:D.197, G:D.197 CA.40: 4 residues within 4Å: Chain H: E.189, R.192, D.194, D.197 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.189, H:R.192, H:D.194, H:D.197, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eydoux, C. et al., Structure of human pancreatic lipase-related protein 2 with the lid in an open conformation. Biochemistry (2008)

Release Date

2007-12-18

Peptides

Pancreatic lipase-related protein 2: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Pancreatic lipase-related protein 2

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