SMTL ID : 2pwp.1 (1 other biounit)

Crystal structure of spermidine synthase from Plasmodium falciparum in complex with spermidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x SPD: SPERMIDINE(Non-covalent)

SPD.1: 12 residues within 4Å: Chain A: W.12, V.52, Q.54, Y.63, H.64, D.88, D.157, S.159, D.160, Q.190, Y.225, P.226 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.63, A:Y.225 Hydrogen bonds: A:D.88, A:D.160, A:Q.190 Water bridges: A:G.90 SPD.3: 12 residues within 4Å: Chain B: W.12, V.52, Q.54, Y.63, H.64, D.88, D.157, S.159, D.160, Q.190, Y.225, P.226 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.63, B:Y.225 Hydrogen bonds: B:D.88, B:D.160, B:Q.190, B:Y.225 Water bridges: B:G.90

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: W.195, F.274 Chain B: K.58, F.61 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.195 GOL.4: 4 residues within 4Å: Chain A: K.58, F.61 Chain B: W.195, F.274 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal structure of spermidine synthase from Plasmodium falciparum in complex with spermidine. To be Published

Release Date

2007-05-22

Peptides

Spermidine synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Spermidine synthase

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