- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x PQ0: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE(Non-covalent)
PQ0.2: 15 residues within 4Å:- Chain A: D.102, S.103, Y.106, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, M.260, G.261
- Ligands: GOL.4
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:M.260
- Hydrogen bonds: A:D.102, A:S.103, A:Q.203, A:G.230, A:A.232
- Water bridges: A:L.231
- Salt bridges: A:D.102, A:D.156
- pi-Stacking: A:Y.106
PQ0.10: 15 residues within 4Å:- Chain B: D.102, S.103, Y.106, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, M.260, G.261
- Ligands: GOL.12
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:M.260
- Hydrogen bonds: B:D.102, B:S.103, B:Q.203, B:G.230, B:A.232
- Water bridges: B:L.231
- Salt bridges: B:D.102, B:D.156
- pi-Stacking: B:Y.106
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: P.56, E.57, G.94, W.95, D.96, R.97
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.94, A:D.96, A:R.97
- Water bridges: A:E.57
GOL.4: 8 residues within 4Å:- Chain A: V.45, N.70, D.102, Q.107, G.261, D.280, V.282
- Ligands: PQ0.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.70, A:Q.107, A:G.261
GOL.5: 5 residues within 4Å:- Chain A: H.145, G.148, S.149, E.191, Q.192
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.145, A:G.148, A:E.191
- Water bridges: A:Q.192
GOL.6: 6 residues within 4Å:- Chain A: W.296, E.317, K.360, F.373, F.377, R.380
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.317, A:E.317, A:R.380
- Water bridges: A:K.360
GOL.7: 7 residues within 4Å:- Chain A: E.22, G.23, K.24, A.25, E.273, F.370, S.371
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.24, A:E.273
GOL.8: 4 residues within 4Å:- Chain A: P.249, L.251, P.252, D.253
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:M.250, A:D.253
- Water bridges: A:D.254
GOL.11: 6 residues within 4Å:- Chain B: P.56, E.57, G.94, W.95, D.96, R.97
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.94, B:D.96, B:R.97
- Water bridges: B:E.57
GOL.12: 8 residues within 4Å:- Chain B: V.45, N.70, D.102, Q.107, G.261, D.280, V.282
- Ligands: PQ0.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.70, B:D.102, B:Q.107, B:G.261
GOL.13: 5 residues within 4Å:- Chain B: H.145, G.148, S.149, E.191, Q.192
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:H.145, B:G.148, B:E.191, B:E.191
- Water bridges: B:Q.192
GOL.14: 6 residues within 4Å:- Chain B: W.296, E.317, K.360, F.373, F.377, R.380
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.317, B:R.380
- Water bridges: B:K.360
GOL.15: 7 residues within 4Å:- Chain B: E.22, G.23, K.24, A.25, E.273, F.370, S.371
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.24, B:E.273, B:E.273
GOL.16: 4 residues within 4Å:- Chain B: P.249, L.251, P.252, D.253
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:M.250, B:D.253
- Water bridges: B:D.254
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tidten, N. et al., Glutamate versus Glutamine Exchange Swaps Substrate Selectivity in tRNA-Guanine Transglycosylase: Insight into the Regulation of Substrate Selectivity by Kinetic and Crystallographic Studies. J.Mol.Biol. (2007)
- Release Date
- 2007-10-30
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x PQ0: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tidten, N. et al., Glutamate versus Glutamine Exchange Swaps Substrate Selectivity in tRNA-Guanine Transglycosylase: Insight into the Regulation of Substrate Selectivity by Kinetic and Crystallographic Studies. J.Mol.Biol. (2007)
- Release Date
- 2007-10-30
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A