SMTL ID : 2pxj.2 (1 other biounit)

The complex structure of JMJD2A and monomethylated H3K36 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.233, H.239, C.305, C.307 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.233, A:H.239, A:C.305, A:C.307

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 4 residues within 4Å: Chain A: H.187, E.189, H.275 Ligands: OGA.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.187, A:E.189, A:H.275, H2O.2

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.3: 12 residues within 4Å: Chain A: Y.131, Y.176, F.184, H.187, E.189, S.195, N.197, K.205, W.207, T.269, H.275 Ligands: FE2.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.131, A:S.195, A:N.197, A:T.269 Water bridges: A:K.240 Salt bridges: A:K.205, A:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Structural basis of the recognition of a methylated histone tail by JMJD2A. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-06-12

Peptides

JmjC domain-containing histone demethylation protein 3A: A
monomethylated Histone H3K36 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

JmjC domain-containing histone demethylation protein 3A

monomethylated Histone H3K36 peptide

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