- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 1 x SER- LEU- LEU- MET- TRP- ILE- THR- GLN- CYS: Cancer/testis antigen 1B(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: E.166, W.167, R.170
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.167
SO4.3: 5 residues within 4Å:- Chain A: E.161, G.162, V.165, E.166, R.169
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.162, A:E.166
- Water bridges: A:R.169, A:R.169
- Salt bridges: A:R.169
SO4.10: 3 residues within 4Å:- Chain B: N.43, K.76, E.78
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.76
SO4.14: 6 residues within 4Å:- Chain C: P.115, Y.116, I.117, D.144, S.145, Q.146
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:I.117, C:D.144, C:S.145, C:Q.146
SO4.15: 7 residues within 4Å:- Chain C: K.135, S.136, W.180, S.181, N.182
- Chain D: F.126, L.144
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:S.136, C:S.136, C:S.181
- Water bridges: D:T.146
SO4.16: 6 residues within 4Å:- Chain C: S.47, L.48, L.49, L.50, Q.58
- Chain D: E.100
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.47, C:S.47, C:Q.58
SO4.18: 3 residues within 4Å:- Chain D: K.116, Q.223, R.225
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Q.223
- Water bridges: D:D.224, D:R.225
- Salt bridges: D:R.225
SO4.19: 7 residues within 4Å:- Chain C: G.42
- Chain D: K.8, V.87, E.105, G.106, S.107, R.108
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.8
SO4.20: 5 residues within 4Å:- Chain D: P.128, E.130, I.133, W.199, R.240
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.240
- 3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.4: 4 residues within 4Å:- Chain A: T.80, G.83, Y.84, T.142
No protein-ligand interaction detected (PLIP)PGE.5: 5 residues within 4Å:- Chain A: Y.27, D.29, D.30
- Chain B: S.58, Y.64
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:Y.64, B:Y.64, A:D.29
PGE.21: 3 residues within 4Å:- Chain D: Q.200, A.241, D.242
No protein-ligand interaction detected (PLIP)- 1 x 7PE: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL(Non-functional Binders)
7PE.6: 15 residues within 4Å:- Chain A: D.30, Q.32, R.35, R.48, P.235, A.236, G.237, D.238, G.239, T.240, F.241
- Chain B: E.51, H.52, S.53, Y.68
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:Q.32, A:R.35, A:R.48, A:A.236, A:G.237, A:D.238, A:G.239, B:H.52, B:Y.68
- Hydrophobic interactions: B:E.51
- 11 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 5 residues within 4Å:- Chain A: A.158, Y.159, T.163
- Chain C: L.96, L.97
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:T.163, C:L.96
GOL.8: 8 residues within 4Å:- Chain A: R.44, D.61, T.64, R.65, K.68
- Chain D: T.53, T.54, D.55
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:R.44, A:R.65, D:T.53
- Water bridges: D:T.54
GOL.9: 2 residues within 4Å:- Chain A: R.21
- Chain B: H.52
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.21, A:R.21
- Water bridges: B:L.55
GOL.11: 7 residues within 4Å:- Chain A: R.234
- Chain B: Q.9, V.10, V.94, K.95, D.97, M.100
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:V.10, B:D.97, B:M.100, A:R.234
GOL.12: 4 residues within 4Å:- Chain B: D.77, W.96, D.97, R.98
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.77, B:D.97, B:R.98, B:R.98
- Water bridges: B:E.75, B:D.77
GOL.13: 10 residues within 4Å:- Chain A: H.188, W.204, L.206, R.234, Q.242
- Chain B: Y.11, S.12, P.15, A.16, R.98
9 PLIP interactions:6 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:S.12, B:S.12, B:S.12, B:A.16, A:H.188, A:R.234, A:Q.242
- Water bridges: B:M.100, B:M.100
GOL.17: 7 residues within 4Å:- Chain C: N.19, L.20, V.21, N.64, Y.77, I.78, A.79
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:L.20, C:N.64, C:I.78, C:I.78
GOL.22: 6 residues within 4Å:- Chain D: R.35, Q.36, D.37, M.40, G.41, R.43
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.35, D:R.35, D:R.35, D:D.37, D:S.86
- Water bridges: D:D.37
GOL.23: 5 residues within 4Å:- Chain D: L.115, E.220, W.221, T.222, Q.223
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.222, D:Q.223
- Water bridges: D:D.114, D:L.115
GOL.24: 5 residues within 4Å:- Chain C: M.167, S.169
- Chain D: V.194, S.195, F.198
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.195, D:S.195
GOL.25: 7 residues within 4Å:- Chain C: P.103, F.105
- Chain D: Y.34, L.42, R.43, L.44, E.58
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:L.42, D:L.44, D:E.58, D:E.58
- Water bridges: D:L.42, C:F.105
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sami, M. et al., Crystal structures of high affinity human T-cell receptors bound to peptide major histocompatibility complex reveal native diagonal binding geometry. Protein Eng.Des.Sel. (2007)
- Release Date
- 2007-09-25
- Peptides
- HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B
T-Cell Receptor, Alpha Chain: C
T-Cell Receptor, Beta Chain: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
DD
E
SMTL ID : 2pye.1
Crystal Structures of High Affinity Human T-Cell Receptors Bound to pMHC RevealNative Diagonal Binding Geometry TCR Clone C5C1 Complexed with MHC
HLA class I histocompatibility antigen, A-2 alpha chain
Beta-2-microglobulin
T-Cell Receptor, Alpha Chain
T-Cell Receptor, Beta Chain
Related Entries With Identical Sequence
1akj.1 | 1oga.1 | 1p7q.1 | 2bnq.1 | 2bnr.1 | 2c7u.1 | 2c7u.2 | 2f53.1 | 2f53.2 | 2p5e.1 | 2p5w.1 | 2v2w.1 | 2v2w.2 | 2v2x.1 | 2v2x.2 | 2vlj.1 | 2vlk.1 | 2vll.1 | 2vll.2 | 2vlr.1 | 2vlr.2 | 3gjf.1 | 3gjf.2 | 3hae.1 | 3hae.2 | 3hae.3 | 3hae.4 | 3hg1.1 | 3o4l.1 | 3utq.1 more...less...3uts.1 | 3uts.2 | 4gkn.1 | 4gkn.2 | 4gks.1 | 4gks.2 | 4i4w.1 | 4jfd.1 | 4jfe.1 | 4jff.1 | 4jfp.1 | 4jfp.2 | 4jfq.1 | 4jfq.2 | 4l29.1 | 4l29.2 | 4l29.3 | 4l29.4 | 4l29.5 | 4l29.6 | 4l29.7 | 4l29.8 | 4l29.9 | 4l29.10 | 4l29.11 | 4l29.12 | 4l29.13 | 4l29.14 | 4l3c.1 | 4l3c.2 | 4l3c.3 | 4l3c.4 | 4l3c.5 | 4l3c.6 | 4l3c.7 | 4l3c.8 | 4l3c.9 | 4l3c.10 | 4l3c.11 | 4l3c.12 | 4l3c.13 | 4l3c.14 | 4mnq.1 | 4no0.1 | 4qok.1 | 4u6x.1 | 4u6y.1 | 5c08.1 | 5c08.2 | 5c09.1 | 5c09.2 | 5c0a.1 | 5c0a.2 | 5c0d.1 | 5c0g.1 | 5eu3.1 | 5eu4.1 | 5eu4.2 | 5eu5.1 | 5eu6.1 | 5hhm.1 | 5hhm.2 | 5hho.1 | 5hyj.1 | 5hyj.2 | 5men.1 | 5meo.1 | 5mep.1 | 5mep.2 | 5meq.1 | 5mer.1 | 5mer.2 | 5n6b.1 | 5n6b.2 | 5nme.1 | 5nme.2 | 5nmf.1 | 5nmf.2 | 5nmg.1 | 5nmg.2 | 5nmh.1 | 5nmk.1 | 6eqa.1 | 6eqb.1 | 6ewa.1 | 6ewa.2 | 6ewc.1 | 6ewc.2 | 6ewo.1 | 6ewo.2 | 6g3j.1 | 6g3j.2 | 6g3k.1 | 6g3k.2 | 6r2l.1 | 6rsy.1 | 6rsy.2 | 6ss7.1 | 6ss7.2 | 6ss8.1 | 6ss8.2 | 6ss9.1 | 6ss9.2 | 6ssa.1 | 6ssa.2 | 6ssa.3 | 6ssa.4 | 6tmo.1 | 6trn.1 | 6tro.1 | 6z9v.1 | 6z9v.2 | 6z9x.1 | 6z9x.2 | 7m8s.1 | 7m8s.2 | 7p3d.1 | 7p3e.1 | 7p3e.2 | 7pbe.1 | 7pbe.2 | 7q98.1 | 7q98.2 | 7q98.3 | 7q98.4 | 7q98.5 | 7q99.1 | 7q9a.1 | 7zuc.1 | 7zuc.2