- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x SR1: 5-S-methyl-5-thio-alpha-D-ribofuranose(Non-covalent)
SR1.5: 9 residues within 4Å:- Chain A: N.46, L.47, L.180, V.184, D.238, F.258, R.365, R.366, V.370
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.46, A:D.238, A:R.365, A:R.365, A:R.366
- Water bridges: A:D.238, A:D.238, A:R.366
SR1.11: 9 residues within 4Å:- Chain B: N.46, L.47, L.180, V.184, D.238, F.258, R.365, R.366, V.370
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.46, B:D.238, B:R.365, B:R.365, B:R.366
- Water bridges: B:R.366
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.6: 19 residues within 4Å:- Chain A: D.44, G.45, N.46, L.47, N.48, V.50, V.61, K.63, M.116, R.117, Y.118, L.119, I.125, M.245, I.254, D.255, E.257
- Ligands: MG.2, MG.3
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:N.46, A:L.47, A:N.48, A:N.48, A:R.117, A:L.119
- Water bridges: A:D.44, A:G.45, A:G.45, A:D.255
- Salt bridges: A:K.63, A:K.63
ADP.12: 19 residues within 4Å:- Chain B: D.44, G.45, N.46, L.47, N.48, V.50, V.61, K.63, M.116, R.117, Y.118, L.119, I.125, M.245, I.254, D.255, E.257
- Ligands: MG.9, MG.10
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:N.46, B:L.47, B:N.48, B:N.48, B:R.117, B:L.119, B:D.255, B:D.255
- Water bridges: B:D.44, B:G.45
- Salt bridges: B:K.63, B:K.63
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 4 residues within 4Å:- Chain A: N.196, R.197, W.198, S.200
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.198, A:W.198
- Water bridges: A:N.196
EDO.13: 6 residues within 4Å:- Chain B: R.230, Q.232, Y.347, N.350, L.351, D.354
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.230, B:R.230, B:Q.232, B:D.354
- Water bridges: B:N.346, B:N.350
EDO.14: 6 residues within 4Å:- Chain B: W.307, N.311, M.348, R.349, L.352, K.407
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.349, B:R.349
- Water bridges: B:N.308, B:N.311, B:R.349
EDO.15: 8 residues within 4Å:- Chain B: L.157, W.318, N.321, K.322, G.326, E.327, A.328, Y.329
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.322, B:Y.329
EDO.16: 3 residues within 4Å:- Chain B: R.197, W.198, S.200
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:W.198, B:W.198
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ku, S.Y. et al., Structure of A. thaliana 5-methylthioribose kinase in complex with ADP and MTR reveals a more occluded active site than its bacterial homolog. Bmc Struct.Biol. (2007)
- Release Date
- 2008-01-15
- Peptides
- Uncharacterized protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x SR1: 5-S-methyl-5-thio-alpha-D-ribofuranose(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ku, S.Y. et al., Structure of A. thaliana 5-methylthioribose kinase in complex with ADP and MTR reveals a more occluded active site than its bacterial homolog. Bmc Struct.Biol. (2007)
- Release Date
- 2008-01-15
- Peptides
- Uncharacterized protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B