SMTL ID : 2q14.2 (1 other biounit)

Crystal structure of Phosphohydrolase (BT4208) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: V.47, V.48, P.50, T.227, R.314 Chain B: K.7, I.8, I.9, Y.25, V.28, Q.34, F.57 Chain D: K.203 13 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B, 2 interactions with chain D Hydrogen bonds: A:T.227, A:R.314, B:I.8, B:Q.34, D:K.203 Salt bridges: A:R.314, B:K.7, B:K.7, D:K.203 pi-Cation interactions: A:R.314, A:R.314 Water bridges: B:N.10, B:Q.34 ADP.3: 13 residues within 4Å: Chain A: I.8, I.9, Y.25, V.28, R.29, Q.34, F.57 Chain B: V.47, V.48, P.50, K.226, T.227, R.314 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:I.8, A:Y.25, A:Q.34, B:R.314 Water bridges: A:N.10, A:R.29 Salt bridges: B:K.226, B:R.314 pi-Cation interactions: B:R.314, B:R.314 ADP.4: 11 residues within 4Å: Chain C: V.47, V.48, K.226, T.227, R.314 Chain D: I.8, I.9, Y.25, V.28, Q.34, F.57 10 PLIP interactions: 7 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:T.227, C:R.314, D:I.8, D:Q.34 Water bridges: C:K.226, D:Q.34 Salt bridges: C:K.226, C:R.314 pi-Cation interactions: C:R.314, C:R.314 ADP.7: 11 residues within 4Å: Chain A: K.203 Chain C: I.8, I.9, Y.25, V.28, Q.34, F.57 Chain D: V.47, V.48, T.227, R.314 11 PLIP interactions: 4 interactions with chain C, 6 interactions with chain D, 1 interactions with chain A Hydrogen bonds: C:Y.25, C:Q.34, D:R.314, A:K.203 Water bridges: C:I.8, C:N.10, D:R.407, D:R.407 Salt bridges: D:R.314 pi-Cation interactions: D:R.314, D:R.314

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Q.41, V.42, Y.167, D.171, Y.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.41, A:D.171 EDO.5: 4 residues within 4Å: Chain C: Q.41, V.42, Y.167, D.171 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.41, C:D.171, C:Y.223 EDO.6: 7 residues within 4Å: Chain C: Q.159, L.160, R.197, L.198, S.369, I.370, D.371 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:L.198, C:D.371

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain D: Q.41, V.42, Y.167, D.171, Y.223 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.41, D:Q.41, D:D.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Phosphohydrolase (BT4208) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution. To be published

Release Date

2007-06-12

Peptides

Phosphohydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Phosphohydrolase

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