SMTL ID : 2q2j.1

Crystal structure of PrTX-I, a PLA2 homolog from Bothrops pirajai

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.19, K.105, R.108 Ligands: TRS.2 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.19, A:K.105, A:R.108

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 6 residues within 4Å: Chain A: G.14, K.15, N.16, K.19, S.20 Ligands: SO4.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.16, A:K.19, A:K.19, A:S.20, A:R.108 Water bridges: A:N.16 TRS.3: 6 residues within 4Å: Chain B: G.14, K.15, N.16, K.19, S.20, R.108 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.14, B:K.15, B:N.16, B:K.19, B:K.19, B:S.20, B:S.20, B:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

dos Santos, J.I. et al., Comparative structural studies on Lys49-phospholipases A(2) from Bothrops genus reveal their myotoxic site. J.Struct.Biol. (2009)

Release Date

2008-06-10

Peptides

Phospholipase A2 homolog 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phospholipase A2 homolog 1

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