SMTL ID : 2q2t.1

Structure of Chlorella virus DNA ligase-adenylate bound to a 5' phosphorylated nick

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Covalent)

AMP.1: 16 residues within 4Å: Chain B: C.10 Chain C: C.1 Chain D: L.28, T.46, P.47, K.48, I.49, R.53, E.88, F.119, L.158, E.182, M.185, R.187, K.207, K.209 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:L.28, D:T.46, D:T.46, D:I.49 Water bridges: D:A.30, D:K.48, D:R.53, D:R.187 Salt bridges: D:K.48, D:K.207, D:K.209 pi-Stacking: D:F.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nair, P.A. et al., Structural basis for nick recognition by a minimal pluripotent DNA ligase. Nat.Struct.Mol.Biol. (2007)

Release Date

2007-07-10

Peptides

Chlorella virus DNA ligase: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
A

Chlorella virus DNA ligase

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