SMTL ID : 2q3f.1 (1 other biounit)

X-ray crystal structure of putative human Ras-related GTP binding D in complex with GMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.18, T.39 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.18, A:T.39, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 22 residues within 4Å: Chain A: L.12, R.13, R.14, S.15, G.16, K.17, S.18, S.19, T.33, L.34, S.38, T.39, P.61, G.62, Q.90, H.121, K.122, D.124, S.162, I.163, Y.164 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.13, A:R.14, A:S.15, A:G.16, A:K.17, A:K.17, A:S.18, A:S.19, A:T.33, A:T.33, A:T.39, A:T.39, A:G.62, A:Q.90, A:K.122, A:K.122, A:I.163 Salt bridges: A:D.124 pi-Stacking: A:Y.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mulichak, A.M. et al., Crystal structure of human Ras-related GTP-binding D. To be published

Release Date

2007-06-12

Peptides

Ras-related GTP-binding protein D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related GTP-binding protein D

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