SMTL ID : 2q3w.1

Ensemble refinement of the protein crystal structure of the cys84ala cys85ala double mutant of the [2Fe-2S] ferredoxin subunit of toluene-4-monooxygenase from Pseudomonas mendocina KR1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.52, E.53 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:S.52, H2O.1, H2O.1, H2O.1, H2O.1, H2O.1 MG.2: 2 residues within 4Å: Chain A: D.95, D.96 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.95, H2O.1, H2O.1, H2O.1, H2O.1

1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.3: 8 residues within 4Å: Chain A: C.44, H.46, I.49, C.63, A.65, H.66, L.67, W.68 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.44, A:H.46, A:C.63, A:H.66

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: S.55, T.62, C.63, R.64 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.53, A:G.54 EDO.5: 3 residues within 4Å: Chain A: W.68, P.80, D.82 No protein-ligand interaction detected (PLIP) EDO.6: 6 residues within 4Å: Chain A: V.13, N.31, S.32, E.33, G.36, V.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levin, E.J. et al., Ensemble refinement of protein crystal structures: validation and application. Structure (2007)

Release Date

2007-06-19

Peptides

Toluene-4-monooxygenase system ferredoxin subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toluene-4-monooxygenase system ferredoxin subunit

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