SMTL ID : 2q4d.1

Ensemble refinement of the crystal structure of a lysine decarboxylase-like protein from Arabidopsis thaliana gene At5g11950

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 1 residues within 4Å: Chain A: E.84 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Y.62, T.85, V.86, G.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.85, A:T.85, A:G.87 EDO.3: 7 residues within 4Å: Chain A: G.17, S.18, H.19, G.114, G.115, T.118 Chain B: F.162 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.17, A:G.17, A:H.19, A:G.115 Water bridges: A:T.118 EDO.4: 3 residues within 4Å: Chain B: R.168, V.171, S.173 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.168, B:R.168, B:V.171 Water bridges: B:S.173 EDO.5: 5 residues within 4Å: Chain A: G.161 Chain B: H.19, S.20, G.21, H.22 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.20, B:G.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levin, E.J. et al., Ensemble refinement of protein crystal structures: validation and application. Structure (2007)

Release Date

2007-06-19

Peptides

Lysine decarboxylase-like protein At5g11950: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine decarboxylase-like protein At5g11950

Related Entries With Identical Sequence