SMTL ID : 2q4x.2 (1 other biounit)

Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At3g16990

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.64, D.68, V.127, K.128, Y.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.68, A:V.127, A:Y.129 Salt bridges: A:R.64 SO4.2: 3 residues within 4Å: Chain A: F.118, D.121, R.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.121 Salt bridges: A:R.205 SO4.3: 3 residues within 4Å: Chain A: K.128, S.192, V.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.192 Salt bridges: A:K.128

1 x HMH: 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE(Non-covalent)

HMH.4: 9 residues within 4Å: Chain A: D.47, F.50, Y.115, I.139, E.140, Y.143, W.168, E.210, F.213 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.50, A:Y.115, A:F.213 Hydrogen bonds: A:D.47, A:E.140 pi-Stacking: A:F.50, A:Y.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levin, E.J. et al., Ensemble refinement of protein crystal structures: validation and application. Structure (2007)

Release Date

2007-06-19

Peptides

Seed maturation protein PM36 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Seed maturation protein PM36 homolog

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