SMTL ID : 2q59.1

Crystal Structure of PPARgamma LBD bound to full agonist MRL20

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 240: (2S)-2-(2-{[1-(4-METHOXYBENZOYL)-2-METHYL-5-(TRIFLUOROMETHOXY)-1H-INDOL-3-YL]METHYL}PHENOXY)PROPANOIC ACID(Non-covalent)

240.1: 22 residues within 4Å: Chain A: C.82, Q.83, R.85, S.86, A.89, E.92, I.93, H.120, I.122, I.123, Y.124, M.126, L.127, L.130, V.136, L.137, I.138, M.145, L.150, M.161, H.246, Y.270 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:R.85, A:A.89, A:I.123, A:Y.124, A:M.126, A:L.127, A:L.127, A:L.130, A:V.136, A:I.138 Hydrogen bonds: A:S.86, A:S.86 Salt bridges: A:H.120, A:H.246 240.2: 24 residues within 4Å: Chain B: F.79, C.82, Q.83, R.85, S.86, A.89, E.92, I.93, H.120, I.123, Y.124, M.126, L.127, L.130, V.136, L.137, I.138, M.145, L.150, F.160, M.161, K.164, H.246, L.250 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:F.79, B:Q.83, B:A.89, B:I.123, B:Y.124, B:M.126, B:L.127, B:L.127, B:V.136, B:I.138, B:F.160 Hydrogen bonds: B:S.86, B:S.86 Water bridges: B:R.85 Salt bridges: B:H.120, B:H.246 pi-Cation interactions: B:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bruning, J.B. et al., Partial Agonists Activate PPARgamma Using a Helix 12 Independent Mechanism. Structure (2007)

Release Date

2007-10-23

Peptides

Peroxisome Proliferator-Activated Receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome Proliferator-Activated Receptor gamma

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