SMTL ID : 2q5i.1

Crystal structure of apo S581L Glycyl-tRNA synthetase mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.114, R.358, K.365 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.114, A:R.358, A:K.365 SO4.2: 3 residues within 4Å: Chain A: D.621, T.629, R.642 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.629 Salt bridges: A:R.642 SO4.3: 4 residues within 4Å: Chain A: S.91, I.280, R.290 Chain B: G.233 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.91, A:S.91, A:S.91 Salt bridges: A:R.290 SO4.4: 3 residues within 4Å: Chain B: H.114, R.358, K.365 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:H.114, B:R.358, B:K.365 SO4.5: 3 residues within 4Å: Chain B: D.621, T.629, R.642 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.642 SO4.6: 4 residues within 4Å: Chain A: G.233 Chain B: S.91, I.280, R.290 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.91, B:S.91, B:S.91 Salt bridges: B:R.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cader, M.Z. et al., Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy. Febs Lett. (2007)

Release Date

2007-06-19

Peptides

Glycyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycyl-tRNA synthetase