SMTL ID : 2q5p.1

Crystal Structure of PPARgamma bound to partial agonist MRL24

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x 241: (2S)-2-(3-{[1-(4-METHOXYBENZOYL)-2-METHYL-5-(TRIFLUOROMETHOXY)-1H-INDOL-3-YL]METHYL}PHENOXY)PROPANOIC ACID(Non-covalent)

241.1: 20 residues within 4Å: Chain A: F.23, I.78, G.81, C.82, R.85, S.86, A.89, E.92, I.93, I.123, Y.124, M.126, L.127, L.130, L.137, I.138, S.139, M.145, M.161, H.246 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.78, A:R.85, A:A.89, A:I.123, A:L.127, A:L.127, A:L.130, A:I.138, A:I.138 Hydrogen bonds: A:R.85, A:S.139 Water bridges: A:E.140, A:E.140 241.2: 22 residues within 4Å: Chain B: F.23, F.61, I.78, G.81, C.82, R.85, S.86, A.89, E.92, I.93, I.123, Y.124, M.126, L.127, L.130, L.137, I.138, S.139, M.145, F.160, M.161, H.246 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.61, B:I.78, B:A.89, B:M.126, B:L.127, B:I.138, B:I.138 Hydrogen bonds: B:S.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bruning, J.B. et al., Partial Agonists Activate PPARgamma Using a Helix 12 Independent Mechanism. Structure (2007)

Release Date

2007-10-23

Peptides

Peroxisome Proliferator-Activated Receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome Proliferator-Activated Receptor gamma

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