SMTL ID : 2q5s.1

Crystal Structure of PPARgamma bound to partial agonist nTZDpa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x NZA: 5-CHLORO-1-(4-CHLOROBENZYL)-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC ACID(Non-covalent)

NZA.1: 17 residues within 4Å: Chain A: L.52, I.78, G.81, C.82, R.85, S.86, A.89, I.123, L.127, L.130, L.137, I.138, S.139, M.145, L.150, F.160, M.161 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.52, A:R.85, A:L.127, A:L.130, A:I.138 Hydrogen bonds: A:S.139 Water bridges: A:E.140 NZA.2: 19 residues within 4Å: Chain B: L.52, F.61, H.63, I.78, G.81, C.82, R.85, S.86, A.89, I.123, L.127, L.130, L.137, I.138, S.139, M.145, L.150, F.160, M.161 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.52, B:F.61, B:I.78, B:R.85, B:L.127, B:L.130, B:I.138 Hydrogen bonds: B:S.139 Water bridges: B:R.85, B:E.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bruning, J.B. et al., Partial Agonists Activate PPARgamma Using a Helix 12 Independent Mechanism. Structure (2007)

Release Date

2007-10-23

Peptides

Peroxisome Proliferator-Activated Receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome Proliferator-Activated Receptor gamma

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